Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10502
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...    32   0.50 
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...    32   0.50 
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...    32   0.50 
At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5...    30   1.5  
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...    30   2.0  
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...    30   2.0  

>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 3   QRTSTYGHFGR--AGFPWESPKPL 68
           Q+T+ YGHFGR    F WE  KPL
Sbjct: 363 QKTAAYGHFGRDDPDFTWEVVKPL 386


>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPL 68
           +T+ YGHFGR  A F WE  KPL
Sbjct: 364 KTAAYGHFGRDDADFTWEVVKPL 386


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 3   QRTSTYGHFGR--AGFPWESPKPL 68
           Q+T+ YGHFGR    F WE  KPL
Sbjct: 363 QKTAAYGHFGRDDPDFTWEVVKPL 386


>At5g02320.1 68418.m00155 myb family transcription factor (MYB3R5)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain; identical to cDNA putative c-myb-like
           transcription factor MYB3R-5 (MYB3R5)  GI:15375300
          Length = 548

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 YVCHCSEGAASPVSLFRL*CD 205
           Y C CS GAASPVSL    C+
Sbjct: 382 YECGCSPGAASPVSLMTTPCN 402


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPL 68
           +T+ YGHFGR    F WE  KPL
Sbjct: 364 KTAAYGHFGRDDPDFTWEVVKPL 386


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPL 68
           +T+ YGHFGR    F WE  KPL
Sbjct: 364 KTAAYGHFGRDDPDFTWEVVKPL 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,989
Number of Sequences: 28952
Number of extensions: 305503
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)