Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10491
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           134   3e-32
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   129   1e-30
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   3.0  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   5.3  
At5g33290.1 68418.m03948 exostosin family protein contains Pfam ...    27   9.2  
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    27   9.2  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  134 bits (324), Expect = 3e-32
 Identities = 63/87 (72%), Positives = 79/87 (90%)
 Frame = +2

Query: 2   FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHY 181
           FN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG +
Sbjct: 3   FNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTF 62

Query: 182 KGQQVGKVMQVYRKKFVVYIERIQKKR 262
           KG++ GKVMQVYR+K+V++IERI +++
Sbjct: 63  KGRE-GKVMQVYRRKWVIHIERITREK 88



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/50 (50%), Positives = 39/50 (78%)
 Frame = +1

Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 399
           ++EK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+KG
Sbjct: 85  TREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  129 bits (311), Expect = 1e-30
 Identities = 60/87 (68%), Positives = 78/87 (89%)
 Frame = +2

Query: 2   FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHY 181
           +N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG Y
Sbjct: 3   YNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTY 62

Query: 182 KGQQVGKVMQVYRKKFVVYIERIQKKR 262
           KG++ GKV+QVYR+K+V++IERI +++
Sbjct: 63  KGRE-GKVVQVYRRKWVIHIERITREK 88



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 30/50 (60%), Positives = 40/50 (80%)
 Frame = +1

Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 399
           ++EK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+KG
Sbjct: 85  TREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEKG 133


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 20  SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 199
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 200 K 202
           +
Sbjct: 96  E 96


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 21   PQEGKTGRGISVLLHI 68
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At5g33290.1 68418.m03948 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 500

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 295 GECRHMLLHHWPFLLNPLNVYNKL 224
           GE R +L  HW  + N + VY++L
Sbjct: 350 GEIRKILFQHWKEMDNEVQVYDRL 373


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +2

Query: 65  HIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKK---FVV 235
           ++ R + S  + +   Q+ N  S     DDE   + G+      G V    RKK   F+V
Sbjct: 583 NLSRAVGSHSVRESQTQRNNSGSSSDSSDDEAGAIEGNMCASATGVVRVQSRKKAEMFLV 642

Query: 236 YIERIQKKRPMVQQHMSAFT 295
             + +   R  V +   AFT
Sbjct: 643 RTDGVSCTREKVTESSLAFT 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,030,045
Number of Sequences: 28952
Number of extensions: 213474
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)