Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10484
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36470.1 68415.m04476 expressed protein                             28   2.9  
At4g23530.1 68417.m03391 expressed protein                             27   6.6  

>At2g36470.1 68415.m04476 expressed protein
          Length = 327

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 273 LGAGRERDAKRDKSSGGKW----CRRAGGRCWWTSRSSLRD 163
           LG G + D +RD SS   W      R  G CW T+++   D
Sbjct: 133 LGVG-DVDHERDTSSSSSWRVSKTERFSGTCWLTTKAQFSD 172


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 300 RNGVRS*DRLGAGRERDAKRDKSSGGKWC---RRAGGRCW 190
           R   R+   L  G   D +RD++SGG  C   RR   R W
Sbjct: 160 RRAKRALTSLLIGLNADERRDRNSGGSGCSNQRRTTSRSW 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,391,324
Number of Sequences: 28952
Number of extensions: 80616
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)