Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10476
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 148 5e-36
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 145 3e-35
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 143 1e-34
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 46 3e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 46 3e-05
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 4e-05
At1g07320.2 68414.m00780 50S ribosomal protein L4, chloroplast (... 31 1.2
At1g07320.1 68414.m00779 50S ribosomal protein L4, chloroplast (... 31 1.2
At2g22730.1 68415.m02694 transporter-related low similarity to s... 30 1.6
At3g03720.1 68416.m00377 amino acid permease family protein simi... 29 2.8
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 29 4.9
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.9
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 29 4.9
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 29 4.9
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 28 6.4
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 28 8.5
At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17 si... 28 8.5
At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17 si... 28 8.5
At2g26510.1 68415.m03181 xanthine/uracil permease family protein... 28 8.5
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 148 bits (358), Expect = 5e-36
Identities = 63/79 (79%), Positives = 71/79 (89%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 170 AGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 229
Query: 688 SAGRKVGLIAARKTGRIRG 744
G+KVGLIAAR+TGR+RG
Sbjct: 230 PPGKKVGLIAARRTGRLRG 248
Score = 128 bits (309), Expect = 4e-30
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIRAQR+GAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FR P++FK +KELF+A EG
Sbjct: 61 VAFRHPFRFKKQKELFVAAEG 81
Score = 118 bits (283), Expect = 6e-27
Identities = 50/84 (59%), Positives = 67/84 (79%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QF+YCGKKATL VGNV+P+ ++PEG ++CN+ +GDRG ARASG++A VI HNPD
Sbjct: 86 QFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDT 145
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
+R+KLPSG+KK++PS R M+G V
Sbjct: 146 SRIKLPSGSKKIVPSGCRAMIGQV 169
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 145 bits (352), Expect = 3e-35
Identities = 64/79 (81%), Positives = 68/79 (86%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 171 AGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDK 230
Query: 688 SAGRKVGLIAARKTGRIRG 744
SAG KVG IAAR+TGR RG
Sbjct: 231 SAGAKVGQIAARRTGRRRG 249
Score = 122 bits (295), Expect = 2e-28
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
Q++YCGKKA L VGNV+P+G++PEG ++CN+ +GDRG LARASG++A VI HNP++
Sbjct: 87 QYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNT 146
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TRVKLPSG+KK+LPS+ R M+G V
Sbjct: 147 TRVKLPSGSKKILPSACRAMIGQV 170
Score = 120 bits (290), Expect = 9e-28
Identities = 57/82 (69%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Frame = +1
Query: 4 MGRVIRAQRRGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 180
MGRVIRAQR+GA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 181 VVHFRDPYKFKTRKELFIAPEG 246
V FR P+++ +KELF+A EG
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEG 82
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 143 bits (347), Expect = 1e-34
Identities = 62/79 (78%), Positives = 70/79 (88%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R
Sbjct: 170 AGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 229
Query: 688 SAGRKVGLIAARKTGRIRG 744
G+KVGLIAAR+TGR+RG
Sbjct: 230 PPGQKVGLIAARRTGRLRG 248
Score = 128 bits (309), Expect = 4e-30
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIRAQR+GAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FR P++FK +KELF+A EG
Sbjct: 61 VTFRHPFRFKKQKELFVAAEG 81
Score = 122 bits (295), Expect = 2e-28
Identities = 53/84 (63%), Positives = 69/84 (82%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QF+YCGKKATL VGNV+P+ ++PEG +VCN+ +GDRG LARASG++A VI HNPD+
Sbjct: 86 QFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDT 145
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TR+KLPSG+KK++PS R M+G V
Sbjct: 146 TRIKLPSGSKKIVPSGCRAMIGQV 169
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +2
Query: 293 VGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 472
+G+ MP+G M GTI+ N+ G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 473 LPSSNRGMVGIV 508
+ + R +G V
Sbjct: 118 INAKCRATIGTV 129
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 565 YKVKRNCW----PYVRGVAMNPVEHPHGGG 642
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +2
Query: 293 VGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 472
+G+ MP+G M GTI+ N+ G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 473 LPSSNRGMVGIV 508
+ + R +G V
Sbjct: 118 INAKCRATIGTV 129
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 565 YKVKRNCW----PYVRGVAMNPVEHPHGGG 642
YK ++ W P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 562 KYKVKRNCWPYVRGVAM-NPVEHPHGG 639
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At1g07320.2 68414.m00780 50S ribosomal protein L4, chloroplast
(CL4) identical to SP:O50061 from [Arabidopsis thaliana]
Length = 280
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 643 NHQHIGKASTVKRGTSAGRKVGLIAARKTGRIRGGKTDTKRRP 771
N++ G AST+ RG G + + +KTG R G T RP
Sbjct: 92 NNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRP 134
>At1g07320.1 68414.m00779 50S ribosomal protein L4, chloroplast
(CL4) identical to SP:O50061 from [Arabidopsis thaliana]
Length = 282
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 643 NHQHIGKASTVKRGTSAGRKVGLIAARKTGRIRGGKTDTKRRP 771
N++ G AST+ RG G + + +KTG R G T RP
Sbjct: 92 NNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRP 134
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Frame = -2
Query: 576 FDLVLVVCP--SSFQNRFVNTSTSRTIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 403
F V ++C + F+ + TIP LL G TFL FT L S I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396
Query: 402 AKFPEARARRPLSPIFSXRLHTMVPSGIAPTGITFPTSRVAFF 274
E +P+ LH + PS + P + T + F
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAISTVAIHIF 438
>At3g03720.1 68416.m00377 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 600
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 134 LLRI*SMTLVEVHLWLLYTSAIHTSSRQGRSSSLLPKALHSQFVYCGKKAT 286
++ I + T + V +WLL S I+ GRS SLL A++ + C +K T
Sbjct: 548 IINIGAGTWIRVLIWLLIGSMIYIF--YGRSHSLLNNAVYVPTMTCTRKTT 596
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 477 HQATEAWSVLFWRWTY*QTYFESWKGIPQVQG 572
H A S L W W+Y T+ +W +P +QG
Sbjct: 64 HPENGAISFL-WSWSYWSTFLLTWAVVPLIQG 94
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 538 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 699
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 377
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -2
Query: 651 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSRTIPTMPLLLDGR 472
+M V +L +W ++ FDLV V+C SSF F++T + P L+D
Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95
Query: 471 TFLAP 457
+ P
Sbjct: 96 CYKPP 100
>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 497
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -2
Query: 651 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSRTIPTMPLLLDGR 472
+M V +L +W ++ FDLV V+C SSF F++T + P L+D
Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95
Query: 471 TFLAP 457
+ P
Sbjct: 96 CYKPP 100
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 W*RCTFGC--CTLPRSIQVQDKEGALHCSRRLYTA 257
W +C C CTLP ++Q + K + CS + TA
Sbjct: 74 WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTA 108
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 403 GEVSRGTCQTTSITHFLXKIAHNGTLRHSSNRHHISNF 290
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g43660.2 68415.m05427 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 123
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 254 CVEPSGAMKSSFLVLNLYGSRKCTTAKGAPLPGSWIISLTTP 129
C +P S+ +V+NLY + GS IIS+T P
Sbjct: 71 CYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 112
>At2g43660.1 68415.m05426 glycosyl hydrolase family protein 17
similar to glucan endo-1,3-beta-glucosidase precursor
SP:P52409 from [Triticum aestivum]; C terminal homology
only
Length = 122
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 254 CVEPSGAMKSSFLVLNLYGSRKCTTAKGAPLPGSWIISLTTP 129
C +P S+ +V+NLY + GS IIS+T P
Sbjct: 70 CYDPINLYNSASVVMNLYYQNQGRQYSKCDFEGSGIISVTDP 111
>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 551
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 518 PPPEQYRPCLCCLMAEPSWLQTVAL 444
PP EQ C+ + PSW +TV L
Sbjct: 36 PPAEQLHHLQYCIHSNPSWHETVVL 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,424,679
Number of Sequences: 28952
Number of extensions: 419144
Number of successful extensions: 1113
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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