Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10473
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase f...    36   0.019
At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase f...    33   0.18 
At5g60620.1 68418.m07608 phospholipid/glycerol acyltransferase f...    29   3.9  
At3g16550.1 68416.m02113 DegP protease, putative contains simila...    29   3.9  
At2g31090.1 68415.m03797 expressed protein                             29   3.9  
At3g11325.1 68416.m01377 hypothetical protein                          28   5.1  
At3g25720.1 68416.m03201 hypothetical protein                          28   6.8  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    27   8.9  
At4g28720.1 68417.m04108 flavin-containing monooxygenase family ...    27   8.9  

>At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           acyltransferase
          Length = 502

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 158 ALQFLLYLPIGVILMVIRIFLGVIL 232
           AL  LL++P G+IL VIRIFLG +L
Sbjct: 237 ALIILLWIPFGIILAVIRIFLGAVL 261


>At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 500

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 158 ALQFLLYLPIGVILMVIRIFLGVIL 232
           AL  LL++P G+IL +IRIF+G +L
Sbjct: 235 ALIILLWIPFGIILAMIRIFVGFLL 259


>At5g60620.1 68418.m07608 phospholipid/glycerol acyltransferase
           family protein contains Pfam PF01553: Acyltransferase
          Length = 376

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 516 TKPVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERAFTRATVQRRQYS 677
           + P+LI PE    N    + F    F++   V P+AI   + F  A    R+ S
Sbjct: 237 SNPLLIFPEGTCVNNNYTVMFKKGAFELDCTVCPIAIKYNKIFVDAFWNSRKQS 290


>At3g16550.1 68416.m02113 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 491

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 47  KIYGRQRKYSTKHLSIYSVMDLAAEKLINKERFNGENALQFLLYLPIGVILMVI 208
           K +G Q KY  K   I    DLA  ++ + E + G N L+F    P+  I+ V+
Sbjct: 116 KRHGSQVKYKAKVQKIAHECDLAILEIDSDEFWKGMNPLEFGDIPPLNEIVYVV 169


>At2g31090.1 68415.m03797 expressed protein
          Length = 75

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 161 LQFLLYLPIGVILMVIRIFLGVILWIASIIL 253
           L FLL LP   + +++ I +GVI+WI  ++L
Sbjct: 9   LGFLLGLPFAFLSLLLSI-IGVIIWIVGLLL 38


>At3g11325.1 68416.m01377 hypothetical protein
          Length = 401

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 158 ALQFLLYLPIGVILMVIRIFLGVIL--WI 238
           AL  L+++P G++L  IRI  G IL  WI
Sbjct: 158 ALLILIWIPFGMVLSPIRILSGFILPMWI 186


>At3g25720.1 68416.m03201 hypothetical protein 
          Length = 282

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 463 PTSMRKMVATSIFSNLWYQRHVQLQENRYMSHSS 362
           P+++RK+VA S+    W QR+  L  + ++  +S
Sbjct: 218 PSTLRKLVAHSVVYATWKQRNNMLHNSHHLDPAS 251


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1132

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 106  GSCGRKVNQQREIQWRKCIAIFTVFTNWSYSDGDQNI 216
            G CG+K      I  R+C  IFT+   W  S+ ++ I
Sbjct: 1004 GGCGKKSYVDHII--RRCPPIFTIVLEWEKSETEKEI 1038


>At4g28720.1 68417.m04108 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 426

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 670 WRRCTVARVKARSTVMATGCTWLLIWNGQSVKRNTALPFVGPLS 539
           WR  TV++ ++  T +   C WL++  G++ +R   +P +  LS
Sbjct: 131 WRVKTVSKSESTQTEVEYICRWLVVATGENAER--VMPEIDGLS 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,085
Number of Sequences: 28952
Number of extensions: 385149
Number of successful extensions: 960
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)