Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10460
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             33   0.24 
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.56 
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    28   5.2  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    28   5.2  
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15...    28   5.2  
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15...    28   5.2  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    28   5.2  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 TGTCPESSCACPEISCACPETSCACPESSCLC 242
           +G C   SC+CP+  C  P  SC C    C C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGCGCGDCGC 328



 Score = 31.9 bits (69), Expect = 0.42
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 153 TCPESSCACPEISCACPETSCACPESSCLCPQTC 254
           +CP+  C  P  SC C    C C + SC   + C
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGC 339



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
 Frame = +3

Query: 165 SSCACPEISCA-------CPETSC----ACPESSCLCPQTC 254
           SSC CP   C+       CP+ SC     CP++ C C  +C
Sbjct: 350 SSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTEC-CRSSC 389


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCACPESSC 236
           C     GTC E  C CP+ SC      C C +S C
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQTC 254
           C+     T  +SS  CP       +T  A   S   CP TC
Sbjct: 391 CMLHTGDTTDQSSPTCPPTEQRSSKTRAASVSSDIFCPVTC 431


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 132 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLC 242
           C+ +  G C    C   E +  C + S  CP+S  +C
Sbjct: 377 CLYEYNGKCYSWGCCPYESATCCDDGSSCCPQSYPVC 413


>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 84

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 QNTGTCP-ESSCACPEISCACPETSCACPESSCLCPQTC 254
           Q   TCP    C C    C CP+T        C C + C
Sbjct: 41  QEHNTCPCGEHCGCNP--CNCPKTQTQTSAKGCTCGEGC 77


>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 85

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 QNTGTCP-ESSCACPEISCACPETSCACPESSCLCPQTC 254
           Q   TCP    C C    C CP+T        C C + C
Sbjct: 42  QEHNTCPCGEHCGCNP--CNCPKTQTQTSAKGCTCGEGC 78


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +3

Query: 132 CVSQ-NTGTCPESSCACPEISCACPE----TSCACPESSCLCPQTC 254
           CV Q + G CP      P  SC C +    T C+   S  +C Q C
Sbjct: 339 CVLQCHPGPCPPCKAFAPPRSCPCGKKMVTTRCSERRSDLVCGQRC 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,379,505
Number of Sequences: 28952
Number of extensions: 106566
Number of successful extensions: 337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)