Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10456
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 105 2e-23
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 105 2e-23
At4g40020.1 68417.m05666 hypothetical protein 29 4.2
At4g33690.1 68417.m04785 expressed protein 29 4.2
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 28 5.6
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 5.6
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 28 5.6
At3g27025.1 68416.m03381 expressed protein 27 9.7
At3g17200.1 68416.m02194 hypothetical protein 27 9.7
At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing... 27 9.7
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 105 bits (253), Expect = 2e-23
Identities = 47/83 (56%), Positives = 66/83 (79%)
Frame = +3
Query: 261 DVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGY 440
+ TG++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+
Sbjct: 124 EATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182
Query: 441 DAESKKFNAEVHRAHIFGLHVAD 509
E+K+ +AE+HR +I+G HV++
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSN 205
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +1
Query: 7 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 186
QDKNKYNTPKYR +VR +NKD+ Q+ + I GD + +AY+HELP+YG+ VGLTNYAAA
Sbjct: 39 QDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAA 98
Query: 187 YSTGXXXXXXXXXXXXXDTLYTG 255
Y TG D Y G
Sbjct: 99 YCTGLLLARRVLKMLEMDDEYEG 121
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +2
Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
YM+ L +D+ + + FS YIK GV A++IE +YKK H AIRA+P+HKK E K + K
Sbjct: 206 YMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTE-KSAPKEHK 264
Query: 689 RWNKRQLTLAERK 727
R+N ++LT ERK
Sbjct: 265 RYNLKKLTYEERK 277
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 105 bits (253), Expect = 2e-23
Identities = 47/83 (56%), Positives = 66/83 (79%)
Frame = +3
Query: 261 DVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGY 440
+ TG++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+
Sbjct: 124 EATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182
Query: 441 DAESKKFNAEVHRAHIFGLHVAD 509
E+K+ +AE+HR +I+G HV++
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSN 205
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +1
Query: 7 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 186
QDKNKYNTPKYR +VR +NKD+ Q+ + I GD + +AY+HELP+YG+ VGLTNYAAA
Sbjct: 39 QDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAA 98
Query: 187 YSTGXXXXXXXXXXXXXDTLYTG 255
Y TG D Y G
Sbjct: 99 YCTGLLLARRVLKMLEMDDEYEG 121
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +2
Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
YM+ L +D+ + + FS YIK GV A++IE +YKK H AIRADP + KK +K + K
Sbjct: 206 YMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADP-NPKKTVKPAPKQHK 264
Query: 689 RWNKRQLTLAERK 727
R+N ++LT ERK
Sbjct: 265 RYNLKKLTYEERK 277
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +2
Query: 518 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 697
++E++ + S RQ S + + +E + KK E + + + K+ KK+S K+K+ +
Sbjct: 371 AMEEEKQRSLNRQES------MPKEVVEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEH 424
Query: 698 KRQLTLAERK 727
+ E+K
Sbjct: 425 SEKKEDKEKK 434
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 599 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRQ 706
E +YK+AH R HKKK KK K+K+ ++++
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 400 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGST 284
PP+ P AP T P V PTS +AP P S T
Sbjct: 41 PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT 77
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = -3
Query: 448 SAS*PGNLLME*GTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGSTL-- 281
+ S PG++ + G+ P+T+P PK+ +PV P+S + P P++ + ST+
Sbjct: 196 ATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPV----SPSSAPMTSPPAPMAPKSSSTIPP 251
Query: 280 YSSPVTS 260
S+P+TS
Sbjct: 252 SSAPMTS 258
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 596 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRQ 706
IE ++ +I+ DP+ KK ++D VK +RW KR+
Sbjct: 337 IEPRNPDSYFSIKKDPTKNKK--RQDFVKDRRWIKRE 371
>At3g27025.1 68416.m03381 expressed protein
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Frame = +2
Query: 554 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 673
Q YI+ T DAI+ ++KK H A R D S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230
>At3g17200.1 68416.m02194 hypothetical protein
Length = 310
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -1
Query: 582 TPSFMYLLNCLLKESSSSCSRLLMYQQHANQRCEPC 475
TP + ++ + K ++ R++++ QH N C C
Sbjct: 150 TPKYSFITWLVSKNRMATGDRMVLWNQHVNTSCSLC 185
>At1g68900.1 68414.m07885 mandelate racemase/muconate lactonizing
enzyme C-terminal domain-containing protein / hydrolase,
alpha/beta fold family protein contains Pfam profiles
PF01188: Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain, PF00561: hydrolase,
alpha/beta fold family
Length = 656
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 630 MASWAFL*MASIASAVTPSF-----MYLLNCLLKESSSSCSRLLMYQQHANQRCEPCVLQ 466
++SW + + AS++ PS M LLN + SS +L YQ+ N +P +Q
Sbjct: 30 ISSWIWSELGITASSIFPSVRCGLEMALLNAMAVRHDSSLLGILHYQKEENGSAQPHSVQ 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,435
Number of Sequences: 28952
Number of extensions: 349575
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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