Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10451
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)     103   3e-23
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...   103   3e-23
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   3.2  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    26   5.6  
At3g61630.1 68416.m06907 AP2 domain-containing transcription fac...    25   9.7  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    25   9.7  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score =  103 bits (247), Expect = 3e-23
 Identities = 46/73 (63%), Positives = 54/73 (73%)
 Frame = +1

Query: 34  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
           +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F         IVLRL+C  CK  SQ  +
Sbjct: 26  TQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPI 85

Query: 214 KRCKHFELGGDKK 252
           KRCKHFE+GGDKK
Sbjct: 86  KRCKHFEIGGDKK 98


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score =  103 bits (247), Expect = 3e-23
 Identities = 46/73 (63%), Positives = 54/73 (73%)
 Frame = +1

Query: 34  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
           +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F         IVLRL+C  CK  SQ  +
Sbjct: 26  TQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPI 85

Query: 214 KRCKHFELGGDKK 252
           KRCKHFE+GGDKK
Sbjct: 86  KRCKHFEIGGDKK 98


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 14  ATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 139
           A    R+     P+KG +  ++D+ I ++RV   SP P S +
Sbjct: 243 AVVIVRHAKFGPPKKGGVKLMKDIDIKSARVKEESPKPDSSK 284


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 101 RVTVVSPNPSSKRRQKPLRKLCSVLS 178
           RV    P PSS RRQ+ +R+ CS+L+
Sbjct: 39  RVYAECPKPSSLRRQQLIRE-CSILA 63


>At3g61630.1 68416.m06907 AP2 domain-containing transcription
           factor, putative transcription factor Pti6 -
           Lycopersicon esculentum, PIR:T07728
          Length = 315

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 38  STKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR 193
           S+ + RKG     E V++ +   T V P      RQ+P  K  + +  P +R
Sbjct: 75  SSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSR 126


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 101 RVTVVSPNPSSKRRQKPLRKLCSVLS 178
           RV    P PSS RRQ+ +R+ C +LS
Sbjct: 39  RVYTECPKPSSLRRQQLIRE-CPILS 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,348,081
Number of Sequences: 28952
Number of extensions: 116956
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)