Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10450
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25570.1 68414.m03174 leucine-rich repeat protein-related co... 35 0.074
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 30 2.1
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ... 30 2.1
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 30 2.1
At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family... 29 2.8
At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family... 28 6.4
At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident... 28 6.4
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 6.4
At1g23660.1 68414.m02984 expressed protein contains Pfam profile... 28 6.4
At3g45680.1 68416.m04937 proton-dependent oligopeptide transport... 28 8.5
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 28 8.5
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 8.5
>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to light
repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376
Length = 628
Score = 34.7 bits (76), Expect = 0.074
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = -3
Query: 782 DELYSGGGGPMVKTRCRYHL--EQFLRALPMEHTVQNTERTEVPPQTQRFQTIRDIGIID 609
D+ YSGG +V R+HL E+ +R P+ +N +PP +T D
Sbjct: 51 DQFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKNCYVVPLPPGRYYLRTFTVYDNYD 110
Query: 608 NPNGPPLYGVKWK-KLVFG--SPGPE 540
+ P + V + LVF SP PE
Sbjct: 111 GKSHSPSFDVSVEGTLVFSWRSPWPE 136
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 203 SGELSGASLQMG*IELG*FNPLKTQVCALXAKKDPFVMAPQFQGVSLQ 346
+GE+S ++G +N + VC L KKDPF + P+ + V L+
Sbjct: 268 AGEMSRGGFEIG---TKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLE 312
>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
contains similarity to root phototropism RPT2
[Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
transducer of phototropic response PMID:10662859
Length = 582
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 191 F*SSLLHHASRETL-MADISRIP-RAVIRIAMHAINRQHVIDIQDEKRGGEHRTLWNASV 18
F S+L S ET +A+ IP R V IAM+A +Q V + +E +G + +W +
Sbjct: 143 FHESVLVLCSCETQEIAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEEL 202
Query: 17 NGHGI 3
+ GI
Sbjct: 203 SALGI 207
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -1
Query: 778 NSTPV---GAVRW*KRDAGIISNNSSEHSPWNIRYKIQREPKSLRRPRGSKRSVTLGLST 608
NS PV G + W ++D I++ N I+ + R+P L G R + +
Sbjct: 189 NSKPVYVNGDLHWLRKDGSIVAFNPETEKARLIQSQFNRKPGKLLLCTGDNRLTLISATD 248
Query: 607 IRTALLCMESNGRSWYL 557
++ +E++G+ W L
Sbjct: 249 AVISVYALETDGQ-WIL 264
>At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 466
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +1
Query: 361 WDTWGRHFERCPVSESF----GRQSQVGVQNAGSPQQSEGY 471
WDTWGR E C + F G V N G P + Y
Sbjct: 207 WDTWGRFMEPCAAYQPFIFAAGNHEIDFVPNIGEPHAFKPY 247
>At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 466
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +1
Query: 361 WDTWGRHFERCPVSESF----GRQSQVGVQNAGSPQQSEGY 471
WD+WGR E C ++F G V N G P + Y
Sbjct: 207 WDSWGRFVEPCAAYQTFIYAAGNHEIDFVPNIGEPHAFKPY 247
>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
identical to SP|Q8GYN5 RPM1-interacting protein 4
{Arabidopsis thaliana}
Length = 211
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 711 QSTPHGTYGTKYRENRSPSADPEVPNDP*HWDYRQSERP 595
++ P+ Y K R+ R+P + PNDP + QS+ P
Sbjct: 16 ENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAP 54
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 705 TPHGTYGTKYRENRSPSADPEVPNDP*HWDYRQSER 598
TPHG T E S++PE+P H + +SER
Sbjct: 933 TPHGLSTTTASEIEPESSEPEIPGLGVHDEIPESER 968
>At1g23660.1 68414.m02984 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 264
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -2
Query: 672 ENRSPSADPEVPNDP*HWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPREAGLC 505
E++SP ++ D ++D + R +W EE W P T + GLC
Sbjct: 22 ESKSPKSEAVWAVDTKYYDLDEVRREGEIWRAAEEKHPWYDAPAKVKVTTKN-GLC 76
>At3g45680.1 68416.m04937 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 558
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -1
Query: 808 MTAVLQVVRMNSTPVG---AVRW*KRDAGIISNNSSEHSPWNIRYKIQREPKSLRRPRGS 638
++AV++ R+ + G +V W I+ + P NI P+SLR S
Sbjct: 419 LSAVVEAKRLKTVENGHPMSVLWLFPPLVIVGIGEAFQFPANIELFYGEFPESLRNTATS 478
Query: 637 KRSVTLGLS-TIRTALLCMESNGRSW 563
SV +G+S + TAL+ + +W
Sbjct: 479 LTSVVIGISFYLSTALIDLIQRTTAW 504
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 646 RGSKRSVTLGLSTIRTALLCMESNGRSWYLG 554
+GS R+ LGLS I T + + +GRS Y G
Sbjct: 652 KGSNRNGGLGLSDIITQIQASKDSGRSSYRG 682
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/79 (26%), Positives = 31/79 (39%)
Frame = -2
Query: 393 TSLEMSTPSIPILSEGCRDTPWNCGAMTKGSFFAXNAQTCVFXGLNYPSSIHPIWRLAPE 214
TSL+ + S L D P N + + QT + GL +IH + AP
Sbjct: 34 TSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPS 93
Query: 213 SSPLQSQVLIVSLAPRFER 157
S+P + + AP R
Sbjct: 94 SAPPPAPAASQTTAPSVTR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,344,356
Number of Sequences: 28952
Number of extensions: 517602
Number of successful extensions: 1566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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