Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10447X
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    69   1e-12
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    68   3e-12
At1g58070.1 68414.m06581 expressed protein                             29   1.0  
At4g28410.1 68417.m04067 aminotransferase-related similar to nic...    28   2.4  
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica...    27   5.5  
At4g19515.1 68417.m02871 disease resistance family protein simil...    27   7.2  
At4g29080.1 68417.m04161 auxin-responsive AUX/IAA family protein...    26   9.5  
At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar ...    26   9.5  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    26   9.5  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +1

Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
           +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE            APGGHLG
Sbjct: 195 IRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLG 254



 Score = 46.8 bits (106), Expect = 6e-06
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +3

Query: 3   APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKS 170
           APTK WRRWH                          ARGH IE +PE+PLVV+D +
Sbjct: 109 APTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSA 164


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +1

Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
           +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE            APGGHLG
Sbjct: 194 IRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLG 253



 Score = 46.8 bits (106), Expect = 6e-06
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +3

Query: 3   APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKS 170
           APTK WRRWH                          ARGH IE +PE+PLVV+D +
Sbjct: 108 APTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSA 163


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 13  SPGGVGTVASTSDSGERPWRQRLLLPAS 96
           SP    +++ T+ S   PW+QR LLP S
Sbjct: 94  SPIASPSISQTASSSSSPWKQRSLLPPS 121


>At4g28410.1 68417.m04067 aminotransferase-related similar to
           nicotianamine aminotransferase [Hordeum vulgare subsp.
           vulgare] GI:6469090
          Length = 447

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 268 QHEDARLVHLKDIRPCLEAPQEDDSLFGLVDLLDLS 161
           Q+ D     LKDI PCL  P++ +S   LV  LDLS
Sbjct: 347 QNVDFAFDALKDI-PCLTCPKKPESCTYLVTKLDLS 381


>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
            domain-containing protein / RING finger domain-containing
            protein similar to transcription factor RUSH-1alpha
            [Oryctolagus cuniculus] GI:1655930; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain, PF00097: Zinc
            finger, C3HC4 type (RING finger)
          Length = 1047

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/78 (23%), Positives = 34/78 (43%)
 Frame = -2

Query: 405  EVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTRDLYTLRISD 226
            +V +V    LH+   ++GA +T+I    + G L L    +    +   +     +L   D
Sbjct: 874  DVTIVEPMRLHSSSPSQGAVKTIIF-SQWTGMLDLVELRILESGIEFRRLDGTMSLAARD 932

Query: 225  HALRRLRKMTACLVLLIS 172
             A++   K     V+L+S
Sbjct: 933  RAVKEFSKKPDVKVMLMS 950


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 405 EVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTRD 250
           E+  VN QE+H GD        + ++ D  GS + +T T    ++ S K  D
Sbjct: 101 EIFPVNKQEMHVGDSCTITKCGVYVINDAAGSSSGNTMTPQCSSMDSLKLLD 152


>At4g29080.1 68417.m04161 auxin-responsive AUX/IAA family protein
           similar to SP|Q38826 Auxin-responsive protein IAA8,
           SP|Q38827 Auxin-responsive protein IAA9 from Arabidopsis
           thaliana; contains Pfam profile: PF02309: AUX/IAA family
          Length = 305

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 428 WPPGASFRRFSLLTFRSSTPG 366
           WPP  SFR+ S+ + +S  PG
Sbjct: 147 WPPIRSFRKNSMASSQSQKPG 167


>At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 184 LVDLLDLSATTRGSSGIFSIMCPLA*TSAGTP 89
           L+D   L +   G SG+F + CP+   S   P
Sbjct: 65  LLDYGSLQSAIAGCSGVFHVACPVPPASVPNP 96


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 327 EDYEGSLTLDTTTVAHFTLTSTKTRDLYTLRISDHALRRLRKMT 196
           ED+ G L L    +AH  L+    RD+ ++     A RRLR++T
Sbjct: 206 EDFCGILQLSDEVLAHNILSRLTPRDVASI---GSACRRLRQLT 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,423
Number of Sequences: 28952
Number of extensions: 171729
Number of successful extensions: 535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)