Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10430
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50860.1 68418.m06302 protein kinase family protein contains ...    29   2.3  
At2g41620.1 68415.m05143 nucleoporin interacting component famil...    29   3.0  
At2g15440.1 68415.m01766 expressed protein contains Pfam profile...    29   3.0  
At1g29670.1 68414.m03626 GDSL-motif lipase/hydrolase family prot...    29   3.0  
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ...    29   4.0  
At1g35780.1 68414.m04448 expressed protein                             29   4.0  
At5g42750.1 68418.m05206 expressed protein                             28   5.3  
At5g08430.1 68418.m00993 SWIB complex BAF60b domain-containing p...    28   5.3  
At5g39560.1 68418.m04792 kelch repeat-containing F-box family pr...    28   7.0  
At2g25920.1 68415.m03110 expressed protein                             28   7.0  
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    27   9.2  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    27   9.2  

>At5g50860.1 68418.m06302 protein kinase family protein contains
           PF00069: Protein kinase domain
          Length = 580

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 705 RFRWKPRSFASVSSHRLASRPRTPVS-PPPLFTTCASNMQD----NSTTFSKLSAI 553
           R  W    F++ SS R     RTP   PP L   C  +++D     +TT+ KL  I
Sbjct: 65  RRTWHTGDFSAGSSRRPGMSLRTPEGWPPWLIAACGDSIKDLTPRRATTYEKLEKI 120


>At2g41620.1 68415.m05143 nucleoporin interacting component family
           protein contains Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 861

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 28  PVVYFQVLALTGQFEPAIEFLSRIP---RYQVHGVHMALALHD 147
           P+VY  VL L+ Q  PAI  LS+      Y +  VH+A++L D
Sbjct: 501 PLVYPYVLLLSVQLLPAIMHLSKEAGDGGYNIDAVHIAISLVD 543


>At2g15440.1 68415.m01766 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 329

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 678 ASVSSHRLASRPRTPVSPPPLFTT----CASNMQDNSTTFSKLSAISYMV 541
           ++ SSH L+S P +   PPP+        +S+  + S +F +LS IS ++
Sbjct: 58  STTSSHSLSSSPSSSSLPPPVLAALLHYTSSSPPNTSMSFLELSTISNII 107


>At1g29670.1 68414.m03626 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00657
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 363

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 420 NSSLRSPGLVDQFNNPHIDSKVIALN 497
           N+ LRS  LVDQ NN H D+K I +N
Sbjct: 251 NNKLRS--LVDQLNNNHPDAKFIYIN 274


>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
           similar to pathogenesis-related protein 1 {Arabidopsis
           thaliana} GI:166805;  contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 177

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 204 RRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKDPSGKNL 347
           R +  VA  + ++TVAAY +KF        +  Y  +R+   P G+N+
Sbjct: 46  RAAVGVAPLKWNKTVAAYAQKFANRQAKAGVCDYSSMRHSDGPYGENI 93


>At1g35780.1 68414.m04448 expressed protein
          Length = 286

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 138 RKSHMNTVYLISWYSREEFDSWLKLSSQS 52
           RK HM+T  L++W   + F+S   +SS+S
Sbjct: 8   RKPHMSTADLLTWPENQPFESPAAVSSRS 36


>At5g42750.1 68418.m05206 expressed protein
          Length = 337

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 645 PRTPVSPPPLFTTCASNMQDNSTTFS--KLSAISYMVIASSNKPLFTSAQQHST 490
           P+   SP P+ +TC+S   D S T S   LS+ S  +  +   P  T++    T
Sbjct: 21  PKQEASPSPISSTCSSPSHDFSFTISLQPLSSSSKHISPTLRSPSKTTSSYQQT 74


>At5g08430.1 68418.m00993 SWIB complex BAF60b domain-containing
           protein / plus-3 domain-containing protein / GYF
           domain-containing protein similar to CPRF interacting
           protein [Petroselinum crispum] GI:9588690; contains Pfam
           profiles PF02201: BAF60b domain of the SWIB complex,
           PF03126: Plus-3 domain, PF02213: GYF domain; contains
           non-conensus AT-AC splice sites at intron 5
          Length = 553

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 198 GHRRSTTVASFELSETVAAYVRKFELTDPSD 290
           G   S  ++ +++S+T+A Y+ K  L DPS+
Sbjct: 45  GKDTSEMISRYDVSDTIAKYISKEGLLDPSN 75


>At5g39560.1 68418.m04792 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif
          Length = 395

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 336 GKNLFMCCCTDLALESRDYELLFGRID-ANSSLRSPGLVD 452
           GK+     C  +ALE R  + ++G+I+  NS L  P L D
Sbjct: 346 GKDKIEIWCAQIALEKRSKDEIWGKIEWINSVLTVPKLCD 385


>At2g25920.1 68415.m03110 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 705 RFRWKPRSFASVSSHRLASRPRTPVSP 625
           RF   P + AS SS +  SRP +PVSP
Sbjct: 116 RFCEDPTATASTSSSQPESRPTSPVSP 142


>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 578 VELSCILLAQVVNSGGGETGVRGRLAK 658
           +++   ++AQV +S GG+TG+  RL K
Sbjct: 204 IQIPTTVMAQVDSSVGGKTGINHRLGK 230


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 578 VELSCILLAQVVNSGGGETGVRGRLAK 658
           +++   ++AQV +S GG+TG+  RL K
Sbjct: 100 IQIPTTVMAQVDSSVGGKTGINHRLGK 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,612
Number of Sequences: 28952
Number of extensions: 282547
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)