Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    29   1.3  
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    29   1.3  
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi...    27   4.0  
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    27   6.9  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    27   6.9  
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...    26   9.1  

>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 NILRLIVLNGKCNKLYICVHCTH 361
           N +   VLN K +K YI VHCTH
Sbjct: 184 NEVNQFVLNLKHSKKYILVHCTH 206


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 NILRLIVLNGKCNKLYICVHCTH 361
           N +   VLN K +K YI VHCTH
Sbjct: 184 NEVNQFVLNLKHSKKYILVHCTH 206


>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF03919: mRNA capping enzyme
           C-terminal domain
          Length = 607

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 311 VLNGKCNKLYICVHCTH 361
           VLN K  K Y+ VHCTH
Sbjct: 172 VLNQKHAKKYVLVHCTH 188


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 233 YIHFVHYSDLVFAVSILSKLCKR 165
           Y HF+ Y D++ AV I  KL +R
Sbjct: 34  YDHFIKYGDILEAVIISDKLTRR 56


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 130 TVTSAPPSVRSTHTTVHIHVNLHEP 56
           T++ A P      T VH+H  +HEP
Sbjct: 132 TISPATPKHGGIPTVVHLHGGIHEP 156


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 382 NRHHLGNMCTMHTNIKLVTFPIKYNQ 305
           N HH G M  MH + ++  FP +Y+Q
Sbjct: 374 NNHHEGFMNFMHRDEEVNYFPSRYDQ 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,717,298
Number of Sequences: 28952
Number of extensions: 158320
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)