Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10428
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    36   0.030
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    33   0.28 
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.49 
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   8.0  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 83  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSS 256
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDIST 58


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 86  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 205
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS 43


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 86  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 220
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 74  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 235
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,295
Number of Sequences: 28952
Number of extensions: 353100
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)