Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10426
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   2.0  
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    30   2.0  
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    30   2.0  
At1g30520.1 68414.m03734 acyl-activating enzyme 14 (AAE14) ident...    29   4.6  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    28   6.0  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 656 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 757
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
 Frame = -2

Query: 733 PLTLESTFFNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*-QKFNANFNKI- 560
           P  LE T FN G +F T  T    ++Y   L   + +S   +++ L   Q  N + +KI 
Sbjct: 91  PYFLEKTTFN-GRVFMTHATK---AIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIE 146

Query: 559 -----LTLTICHSPFRCATVGKAIGAGLFAITPAGER 464
                 T+ +    F C T G  +GA +F +  AG R
Sbjct: 147 VIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 183


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
 Frame = -2

Query: 733 PLTLESTFFNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*-QKFNANFNKI- 560
           P  LE T FN G +F T  T    ++Y   L   + +S   +++ L   Q  N + +KI 
Sbjct: 91  PYFLEKTTFN-GRVFMTHATK---AIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIE 146

Query: 559 -----LTLTICHSPFRCATVGKAIGAGLFAITPAGER 464
                 T+ +    F C T G  +GA +F +  AG R
Sbjct: 147 VIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 183


>At1g30520.1 68414.m03734 acyl-activating enzyme 14 (AAE14)
           identical to acyl-activating enzyme 14 [Arabidopsis
           thaliana]; similar to SP|Q42524 4-coumarate--CoA ligase
           1 (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1)
           {Arabidopsis thaliana}; contains Pfam profile PF00501:
           AMP-binding enzyme; identical to cDNA acyl-activating
           enzyme 14 (At1g30520) GI:29893263
          Length = 560

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 231 RVRAGRYYHPAYFCREA-VMRFGLKGGAAVVIILETLELISQGEWRIYIVDVYGLQ*PLS 55
           R R GR +        A ++R GL+ G  V I     +L    EW + +  V G+  PL+
Sbjct: 31  RKRTGREFVDGVLSLAAGLIRLGLRNGDVVSIAAFNSDLFL--EWLLAVALVGGVVAPLN 88

Query: 54  TRWAVSSS 31
            RW++  +
Sbjct: 89  YRWSLKEA 96


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 530 QVRNCWEGDRCGPLRYYASWRKGDVLQGD 444
           +V+  W+GD C P+ Y  SW   D +Q D
Sbjct: 383 RVKKNWQGDPCVPVDY--SWEGIDCIQSD 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,528
Number of Sequences: 28952
Number of extensions: 397585
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)