Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10423
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa...    32   0.41 
At3g61290.1 68416.m06859 hypothetical protein                          29   2.9  
At4g17990.1 68417.m02677 hypothetical protein contains Pfam prof...    29   5.1  

>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 320

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +2

Query: 341 RTFVTSQDPTEHLNVNFXDFNRNPLCMLCISGPVHVESTVHSSARTIRCSCQTSTINMSH 520
           +T + S+ P  +++++  D   + + +LC + P+H E    SS++T    C+    + S 
Sbjct: 66  KTVIKSESPI-YIDLDLYDDEDDDIRILCFAPPIHREKGQSSSSKTATFDCEICVDSKSI 124

Query: 521 GEVIRELSCCMH 556
            E  R +  C H
Sbjct: 125 IESFR-IGGCSH 135


>At3g61290.1 68416.m06859 hypothetical protein
          Length = 455

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 ISPSLSHACDVTRPYRACECK 189
           +SPS+  ACD+ RPYR  E K
Sbjct: 403 MSPSVKSACDLPRPYRDDELK 423


>At4g17990.1 68417.m02677 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 265

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 612 CHEFSSRLNPNMDIGL*S*CIQQLSSRITSPC-DIFIVLV 496
           C EF SR+  +    L   CI++ +SRIT+ C   +I LV
Sbjct: 82  CREFWSRVAESQGTNLQLSCIEKCNSRITTVCIGYYITLV 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,938,833
Number of Sequences: 28952
Number of extensions: 380852
Number of successful extensions: 1003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)