Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10422
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 138 2e-33
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 138 2e-33
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 138 2e-33
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 138 2e-33
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 138 2e-33
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.014
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 29 2.1
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.7
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 28 6.5
At4g26330.1 68417.m03786 subtilase family protein contains simil... 28 6.5
At4g14280.1 68417.m02201 hypothetical protein 28 6.5
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb... 28 6.5
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 8.5
At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibit... 27 8.5
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 138 bits (335), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL RPG+ VA
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA 141
Score = 80.6 bits (190), Expect = 9e-16
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
++ + RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 138 bits (335), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 48 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 107
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL RPG+ VA
Sbjct: 108 YDPSTGIYGMDFYVVLERPGYRVA 131
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/47 (78%), Positives = 43/47 (91%)
Frame = +3
Query: 114 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 47
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
++ + RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 128 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 138 bits (335), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL RPG+ VA
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA 141
Score = 80.6 bits (190), Expect = 9e-16
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
++ + RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 138 bits (335), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL RPG+ VA
Sbjct: 118 YDPSTGIYGMDFYVVLERPGYRVA 141
Score = 80.6 bits (190), Expect = 9e-16
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 57
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
++ + RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 138 YRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 138 bits (335), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 48 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 107
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL RPG+ VA
Sbjct: 108 YDPSTGIYGMDFYVVLERPGYRVA 131
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/47 (78%), Positives = 43/47 (91%)
Frame = +3
Query: 114 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 47
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 493 FQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
++ + RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 128 YRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 320 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 484
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 352 FSDFQTPLKDFFCFSSSDCTMDSNLFITTDT-KSR-TVYLALENTGCCPVSCSNTLAARV 179
F+ + TP FS C ++L I ++ K R + ++ + NT CS TL
Sbjct: 812 FASYGTPRGSCDGFSIGKCHASNSLSIVSEACKGRNSCFIEVSNTAFISDPCSGTLKTLA 871
Query: 178 SLSPDSPTQ 152
+S SP+Q
Sbjct: 872 VMSRCSPSQ 880
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 317 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 481
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +3
Query: 129 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRLLVSVVMKRLLSIVQSEE 308
I +L L + + ++ LEQ F K T++ + SV + R L+ +
Sbjct: 702 IEQLQLLLSNSQKIEKPLSKGNALEQPDDPVSYFMKFLSTLQNIPSVSLFRSLNEADEKA 761
Query: 309 LKQKKSLRGV*KSENMNCGVTTSP 380
K+ + E NCG++T P
Sbjct: 762 FKELQETESKLLKEERNCGLSTDP 785
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 396 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWT 286
P++ V K + +SY +TFKP S + WT
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWT 723
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 414 TLTWVSSTIPQLEFMDWTFTS 476
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
gb|T22270 and gb|T76886 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 274
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 242 VYSAAFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELR 364
+Y F + K+A H K EI E G ++RE E R
Sbjct: 75 IYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEAR 115
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 363 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 494
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
SP|Q42534; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 208
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -2
Query: 346 DFQTPLKDFFCFSSSDCTMDSNL---FITTDTKSRTVYLALENTGCCPVSCSNTLAARVS 176
+FQ + D + S+ T D F T +++RTV + C CSN LA
Sbjct: 143 EFQRQISDLATWLSAALTDDDTCLDGFEETSSRTRTVRMVRRKATKCMRLCSNALALLKK 202
Query: 175 LSPD 164
L+ D
Sbjct: 203 LAFD 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,059
Number of Sequences: 28952
Number of extensions: 279926
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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