Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30136
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    30   1.7  
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    29   2.3  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    29   4.0  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    27   9.3  

>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -2

Query: 388 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATVLHRVSPDFDLTRHSSPS 209
           K  +D+   E   G   +    +   P+  +P +DL      +L   +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 208 FGSQHLCSE 182
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 306 YTQFRRSICTSESLRSSTGFPLT 238
           YTQFR+S+    S+RSST  PL+
Sbjct: 195 YTQFRKSVEAKCSIRSSTRIPLS 217


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1338

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 180 RSEHKCWDPKDGELCL---VRSKSGETLWRTVAILTCKSIVGTGYRGERLI 323
           + E   W P   +L     +   SGE +WRTVA L C  +V   +R +R++
Sbjct: 313 KDEQVIWQPYTPDLLAKIPLICVSGENIWRTVAPLICFDVV-EWHRPDRVL 362


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 505 PASSFE*AGVLTHLKFENRLRSFR 434
           PAS+FE + V T  +FE   RSFR
Sbjct: 290 PASNFESSSVQTSFEFEKPKRSFR 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,051,929
Number of Sequences: 28952
Number of extensions: 353458
Number of successful extensions: 826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)