Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30132
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    29   1.9  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.5  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   5.9  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.9  
At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger) fa...    27   7.8  

>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +2

Query: 146 KRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSPAAQAYYGNLVAGSIVSQLTAAAM 325
           K    CC   +  S +      A+        RKH    Q  +  L+A  ++  L   AM
Sbjct: 87  KLSEDCCRYGNENSQNIDENILAKAAAIYGDARKHVDKEQEDFNKLLASQVLDPL--RAM 144

Query: 326 VAPTP*GDAKH 358
           VA +P  DA+H
Sbjct: 145 VAGSPLEDARH 155


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 107 KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 205
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 402 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 298
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 201 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 55
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At4g00305.1 68417.m00038 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 126

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 417 ILIPNKTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMLPATKF 277
           +++ +  + VRS+ D+     L      G+T+   +  D MLPATKF
Sbjct: 15  VILNDFIKSVRSFLDIRR---LFGSASSGSTIIDKIPMDDMLPATKF 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,750
Number of Sequences: 28952
Number of extensions: 184541
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)