Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30130
(569 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 118 4e-27
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 118 4e-27
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 118 4e-27
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 33 0.10
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 1.2
At5g04470.1 68418.m00445 expressed protein 29 2.2
At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat... 28 5.0
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 5.0
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 5.0
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 118 bits (283), Expect = 4e-27
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 112 PARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGS 171
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SEA LL L I PFSYGLVV+ VYD
Sbjct: 172 SEAALLAKLGIRPFSYGLVVQSVYD 196
Score = 80.6 bits (190), Expect = 7e-16
Identities = 35/85 (41%), Positives = 52/85 (61%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +KN L
Sbjct: 197 NGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256
Query: 435 XXXXXXXXXXXKEFIKDPSKFAAVA 509
KEF+KDPSKF A
Sbjct: 257 TDYTFPQAEKVKEFLKDPSKFVVAA 281
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 118 bits (283), Expect = 4e-27
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 112 PARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGS 171
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SEA LL L I PFSYGLVV+ VYD
Sbjct: 172 SEAALLAKLGIRPFSYGLVVQSVYD 196
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +KN L
Sbjct: 197 NGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVA 256
Query: 435 XXXXXXXXXXXKEFIKDPSKFAAVA 509
KE++KDPSKFA +
Sbjct: 257 TEYTFPQAEKVKEYLKDPSKFAVAS 281
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 118 bits (283), Expect = 4e-27
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 113 PARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGS 172
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SEA LL L I PFSYGLVV+ VYD
Sbjct: 173 SEAALLAKLGIRPFSYGLVVESVYD 197
Score = 84.2 bits (199), Expect = 5e-17
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT+A+APH N +KN+L
Sbjct: 198 NGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALA 257
Query: 435 XXXXXXXXXXXKEFIKDPSKFA-AVA 509
KEF+KDP+KFA AVA
Sbjct: 258 TEYSFPQAENVKEFLKDPTKFAVAVA 283
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +1
Query: 70 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 234
E + L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 11 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 190
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 191 P 193
P
Sbjct: 118 P 118
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 17 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 133
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
/ EDGP-related similar to extracellular dermal
glycoprotein EDGP precursor [Daucus carota] GI:285741
Length = 405
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 329 NSSLELGTEILWFDVQNFRCKNSSRSYTC 243
N L+LGT + W D + + +S R TC
Sbjct: 54 NLLLDLGTNLTWLDCRKLKSLSSLRLVTC 82
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 44 PPTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 205
P TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 58 PKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 144 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 37
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 144 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 37
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,862
Number of Sequences: 28952
Number of extensions: 265222
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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