Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30120
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...    30   1.3  
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...    29   3.0  
At1g34095.1 68414.m04227 expressed protein ; expression supporte...    28   6.8  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    27   9.0  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    27   9.0  
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    27   9.0  
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp...    27   9.0  

>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/63 (36%), Positives = 27/63 (42%)
 Frame = +1

Query: 418 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIVGSNQCNSCRCNADGYGICSDEACTEHIIEP 597
           GPM+L  L KI N  +      +  R GI     C SC  N DG   C+  AC   I   
Sbjct: 77  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKIESG 128

Query: 598 KKE 606
            KE
Sbjct: 129 SKE 131


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = +1

Query: 418 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIVGSNQCNSCRCNADGYGICSDEACTEHIIEP 597
           GPM+L  L KI N  +      +  R GI     C SC  N DG   C+  AC   I + 
Sbjct: 78  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKIQDE 129

Query: 598 KKE 606
             E
Sbjct: 130 ASE 132


>At1g34095.1 68414.m04227 expressed protein ; expression supported
           by MPSS
          Length = 203

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
 Frame = +2

Query: 101 LRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGM-PGGNRGESN---- 265
           L  W    ++     +  R   KR  ++   R    R    V  G   GGN+ +      
Sbjct: 54  LELWKENSETLFNNVLVKRKTGKRPVKTTTQR----RGEKFVSKGRNKGGNKSQKKAEKW 109

Query: 266 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRC 358
           C FC C D   ++C ++   D +     VRC
Sbjct: 110 CDFCTCDDYFESDCWKKQHRD-VSLPTGVRC 139


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 198 DASAVQEMQSEVECLAGTEGRATATSAGALIQESPSA*GRTAVIKLYLLNLCVVSQAPPS 377
           D S++ E+ S +E L   + R       +L+ E PS    T + +LYL N   + + PPS
Sbjct: 401 DCSSLVELPSSIEKLTSLQ-RLYLQRCSSLV-ELPSFGNATKLEELYLENCSSLEKLPPS 458


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +1

Query: 94  RDTAKVEP*NAVLAQKAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPRGEQLPL 273
           RD + ++P N    +  +    KN++ N  +     ++ S + S +W    +P+  Q  L
Sbjct: 637 RDESSIKPDNGDKRKNQNGNHKKNREINMSKRHDPGKVHSVEVSERWERREQPKSRQRDL 696


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 508 GSNQCNSCRCNADG-YGICSDEACTEHIIEPKKECAPK 618
           G  +C  CR N DG YG  S   C ++ +  +  CA +
Sbjct: 337 GDGKCRVCRKNVDGFYGAYSCSKCFDYFVHSR--CATR 372


>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein weak similarity to
           spliceosome-associated-protein 114 [Echinococcus
           multilocularis] GI:11602721; contains Pfam profile
           PF01805: Surp module
          Length = 285

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 452 TIFYRHPRSIGPDRYLSRRKCYNPSGRRC 366
           T F    RS     +LSRR CY P  +RC
Sbjct: 107 TSFRTRVRSFTTSLWLSRRGCYFPVEKRC 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,246
Number of Sequences: 28952
Number of extensions: 399101
Number of successful extensions: 1246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)