Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30116
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 74 1e-13
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 73 2e-13
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 6e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.008
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.010
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.072
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.29
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.38
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.38
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 0.67
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 31 0.67
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 1.2
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 30 1.5
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 30 1.5
At1g66350.1 68414.m07536 gibberellin regulatory protein (RGL1) s... 30 1.5
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 29 2.0
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 2.7
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 2.7
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 2.7
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.6
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 3.6
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 29 3.6
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 3.6
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 4.7
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 6.2
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 28 6.2
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 27 8.2
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro... 27 8.2
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 27 8.2
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 27 8.2
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 27 8.2
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNE--YYPTT-DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 424
+L+ V+ KI+++ G I + P D +T GY F+E++ PQ A A + ++ KLDK
Sbjct: 73 KLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 132
Query: 425 QHTFLVNLFTDFQKYSDIPKEWEPP 499
H F VN+F DF + ++ +EWEPP
Sbjct: 133 SHIFAVNMFDDFDRLMNVKEEWEPP 157
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNE--YYPTT-DNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 424
+L+ V+ KI+++ G I P D +T GY F+E++ PQ A A + ++ KLDK
Sbjct: 74 KLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDK 133
Query: 425 QHTFLVNLFTDFQKYSDIPKEWEPP 499
H F VN+F DF + ++ +EWEPP
Sbjct: 134 SHIFAVNMFDDFDRLMNVKEEWEPP 158
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCK 415
+ ++ + F++FGKIV+ +N L GY F+ + NP++A A + N K
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 263 SVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
+V+ +F KFG IV+ T ++G + GY F+++ A A++ N+
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+N++FS++G I + Y D + GY F+++S + A A+KA N
Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 448
+NK+F +FG + G + G+ F+ + N +AA AV A N D + F+
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 449 FTDFQKYSDIPKEWEPPAPQHSRCSQ 526
++ +++ +++E + + SQ
Sbjct: 300 QKKSERETELKQKFEQSLKEAADKSQ 325
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
+ ++FS FG+I + P + G GY F+E+ Q A A KA + +H L
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVL 741
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ ++ ++F + G +VN Y P L Y F+EY + ++A A+K N KL
Sbjct: 38 EELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKL 91
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
++ +FS++G + + G + G+ F+ + NP+NA +A+++ +L + F+
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+ +IF +G+IV+ +NG + G+ F+ +SN + + +A + N +D
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ ++FS+FG I + NG++ G F+E+S + A++A+ N
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 278 IFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
+FS FGK+++ +G++ GY F+++ + + A N + QH
Sbjct: 50 MFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDK 424
+S I F + G++V+ + D+G GY +E+++P+ A +A++ L +
Sbjct: 397 RSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGR 451
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+ +FS+ GK+V D+G + G+ F+ Y + Q A+K+ + LD
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 269 INKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 430
I F FG+I N +G GY +EY + A A+ A N +L Q+
Sbjct: 111 ITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 269 INKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKL 418
+ K+F FG + P + GL G+ F++++ ++A A+ ++
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEI 350
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 431 TFLVNLFTDFQKYSDIPKEWEPPA 502
TFL++L TD + +IP W PP+
Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS 461
>At1g66350.1 68414.m07536 gibberellin regulatory protein (RGL1)
similar to GB:CAA75492 from [Arabidopsis thaliana];
contains Pfam profile PF03514: GRAS family transcription
factor; identical to cDNA RGL1 protein GI:15777856, RGL1
protein [Arabidopsis thaliana] GI:15777857
Length = 511
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 319 GVVFVDYFTEFTKYFVYNAL*FSRRSGPTADTRLRLQRFHNRQI 188
G VF+D FTE Y Y++L F GP + R+ + F RQI
Sbjct: 385 GTVFLDRFTESLHY--YSSL-FDSLEGPPSQDRVMSELFLGRQI 425
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 441 TKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVSPL 328
T+ CCL N + +AF A+A C S+K VS L
Sbjct: 4 TRGSCCLVNALIAIAFLATAHLCEAGLSQKEQDKVSKL 41
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 IFSKFGKIVNEYYP-TTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 IFSKFGKIVNEYYP-TTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 421
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 278 IFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAV 394
+FS FGK++ G + G+ F+E+ + +A A+
Sbjct: 36 MFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 269 INKIFSKFGKIVN-EYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 254 ELQSVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
EL+ +N +FS+FGKI+ T G ++ + N ++A+ A+ NN
Sbjct: 33 ELKKSLNAVFSQFGKILEILAFKTFK--HKGQAWVVFDNTESASTAIAKMNN 82
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 278 IFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
+F +V+ N + GY ++ +SNP +A A++A N
Sbjct: 68 LFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 281 FSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 439
FS FG I++ G + GY F+++ ++A A+ N ++ + F+
Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 263 SVINKIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATNN 409
S + ++FSKFG++ + +GY F+ + + ++A +A++ T+N
Sbjct: 16 SDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRTDN 57
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 QSVINKIFSKFGKIVNEYYPTTD-NGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 436
+S I + F +G I + T GY F+EY + ++ A K + K+D +
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR--- 207
Query: 437 LVNLFTDFQKYSDIPKEWEP 496
+ D ++ +P W P
Sbjct: 208 --RVLVDVERGRTVP-NWRP 224
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 229 DTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEELDSL 53
D RL++ +N Q P ++ PP+ + + NP L+Q+ V H L SL
Sbjct: 60 DALSRLEKLNNEQEPQVEIIPNPPLEPVSYPVSNPTIVTRTDLVQNKVREHHRGVLSSL 118
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 275 KIFSKFGKIVNEYYPTTDNGLTTGYIFLEYSNPQNAAEA 391
+I+ KFG + E T DN + FL+ ++ + A E+
Sbjct: 884 EIYEKFGALDKERTDTVDNNFSAHVAFLDVADGEKAFES 922
>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to SAC domain protein 2
(SAC2) GI:31415720
Length = 808
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 404 NNCKLDKQHTFLVNLFTD-FQKYSDIPKEWEPPAPQHSRCSQIL 532
+N +D + +N+F FQ SD P WE + QH ++ L
Sbjct: 584 SNAYMDAEKQDAINVFLGYFQPQSDKPALWELGSDQHYNAARFL 627
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 266 VINKIFSKFGKI-VNEYYPTTDNGLTTGYIFLEYSNPQNAAEAVKATN 406
V++K F++F + + G T GY F+ + NP + A A+K N
Sbjct: 152 VLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199
>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 611
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 431 TFLVNLFTDFQKYSDIPKEWEPPA 502
TFL++L D + +IP W PP+
Sbjct: 427 TFLLDLSMDIPAWREIPVPWTPPS 450
>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 601
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 431 TFLVNLFTDFQKYSDIPKEWEPPA 502
TFL++L D + +IP W PP+
Sbjct: 417 TFLLDLSMDIPAWREIPVPWTPPS 440
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,112
Number of Sequences: 28952
Number of extensions: 300398
Number of successful extensions: 829
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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