Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30107
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase f...    29   3.0  
At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase f...    29   4.0  
At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase f...    29   4.0  
At2g24030.2 68415.m02870 expressed protein  and genefinder             28   5.2  
At2g24030.1 68415.m02871 expressed protein  and genefinder             28   5.2  
At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    28   5.2  

>At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 347

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  HVSTTNVDVCIVAVFLASLVREHNTTL 4
           H+ T  +DVC+V    + +V  H+TTL
Sbjct: 70  HLDTAGIDVCLVGDSASMVVHGHDTTL 96


>At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  HVSTTNVDVCIVAVFLASLVREHNTTL 4
           H+ T  +DVC+V    A +V  ++TTL
Sbjct: 72  HIDTAGIDVCLVGDSAAMVVHGYDTTL 98


>At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  HVSTTNVDVCIVAVFLASLVREHNTTL 4
           H+ T  +DVC+V    A +V  ++TTL
Sbjct: 72  HIDTAGIDVCLVGDSAAMVVHGYDTTL 98


>At2g24030.2 68415.m02870 expressed protein  and genefinder
          Length = 374

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 685 KPHETIITKTLNTQREMLPL*KHHTIMSRHINLLESEK 572
           K  ET+  KT N Q       ++HT+  +H+ LLE ++
Sbjct: 299 KKKETVWCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQ 336


>At2g24030.1 68415.m02871 expressed protein  and genefinder
          Length = 455

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 685 KPHETIITKTLNTQREMLPL*KHHTIMSRHINLLESEK 572
           K  ET+  KT N Q       ++HT+  +H+ LLE ++
Sbjct: 380 KKKETVWCKTCNIQTNSEQTMRNHTLGKKHMALLEKQQ 417


>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 696 DNFQSLMKQLLQKH*IHKERCCPYEN 619
           DN+Q++ K    KH  H+ER CP E+
Sbjct: 256 DNWQAIRKLHSTKHYEHRERHCPEES 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,725
Number of Sequences: 28952
Number of extensions: 234930
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)