Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30094
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    31   1.1  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    31   1.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    30   1.4  
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   2.5  

>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRE 451
           N +   ++F+ ++ ++  S+DHTIQ +L+L  +++ +  S+ K+  E
Sbjct: 47  NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPE 93


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRE 451
           N +   ++F+ ++ ++  S+DHTIQ +L+L  +++ +  S+ K+  E
Sbjct: 70  NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPE 116


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 415  KNVINEHKNVLNGVVLADMRQEVEKDFGTGIGILVRQ 305
            K + N HKN ++  VL  + Q + +D G+ +G   RQ
Sbjct: 2192 KTLANVHKNFVDSYVLVRILQRLARDLGSAVGSHPRQ 2228


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 260 DHDFIVNLDQRGQKDL-PDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRV 436
           DHD I+ +    QKDL  D     CA   LN +  +  + TI  +L  + ++L+  K  V
Sbjct: 116 DHDLIILIVNTIQKDLRSDNYLVVCAA--LNAICRLINEETIPAVLPQVVELLNHQKEAV 173

Query: 437 K 439
           +
Sbjct: 174 R 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,522
Number of Sequences: 28952
Number of extensions: 310299
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)