Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30093
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 126 2e-29
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 126 2e-29
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 118 3e-27
At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11) ide... 36 0.038
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi... 36 0.038
At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical... 34 0.088
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general... 30 1.4
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi... 30 1.4
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica... 30 1.4
At1g13540.1 68414.m01587 expressed protein 30 1.9
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 29 2.5
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 29 2.5
At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1) i... 29 3.3
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical... 29 3.3
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 29 3.3
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 29 3.3
At3g30520.1 68416.m03863 hypothetical protein 28 5.8
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 28 5.8
At4g24900.1 68417.m03564 expressed protein 28 7.6
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 126 bits (304), Expect = 2e-29
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMY 83
Score = 75.4 bits (177), Expect = 4e-14
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG AR
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFAR 128
Score = 75.4 bits (177), Expect = 4e-14
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +3
Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
ASG++A VI HNPD +R+KLPSG+KK++PS ++M+G VAGGGR +KP+ ++ +
Sbjct: 129 ASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAY-H 187
Query: 582 SNKVKRN-WLAIM*RGVGH*NLLSIPSRVVVTNHTL*GKASTGQR 713
+VKRN W + RGV N + P NH G AST +R
Sbjct: 188 KYRVKRNCWPKV--RGVAM-NPVEHPHG--GGNHQHIGHASTVRR 227
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 126 bits (304), Expect = 2e-29
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMY 83
Score = 78.2 bits (184), Expect = 5e-15
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +3
Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
ASG++A VI HNPD+ TR+KLPSG+KK++PS ++M+G VAGGGR +KP+ ++ +
Sbjct: 129 ASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAY-H 187
Query: 582 SNKVKRN-WLAIM*RGVGH*NLLSIPSRVVVTNHTL*GKASTGQR 713
+VKRN W + RGV N + P NH G AST +R
Sbjct: 188 KYRVKRNSWPKV--RGVAM-NPVEHPHG--GGNHQHIGHASTVRR 227
Score = 77.4 bits (182), Expect = 9e-15
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LAR
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLAR 128
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 118 bits (285), Expect = 3e-27
Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 195
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 196 VVHFRDPYKFKTRKELFIAPKPLH 267
V FR P+++ +KELF+A + ++
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMY 84
Score = 79.0 bits (186), Expect = 3e-15
Identities = 48/104 (46%), Positives = 65/104 (62%)
Frame = +3
Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
ASG++A VI HNP++ TRVKLPSG+KK+LPS ++M+G VAGGGR +KP ++ +
Sbjct: 130 ASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAY-H 188
Query: 582 SNKVKRNWLAIM*RGVGH*NLLSIPSRVVVTNHTL*GKASTGQR 713
K KRN ++ RGV N + P NH G AST +R
Sbjct: 189 KYKAKRNCWPVV-RGVAM-NPVEHPHG--GGNHQHIGHASTVRR 228
Score = 76.6 bits (180), Expect = 2e-14
Identities = 30/46 (65%), Positives = 40/46 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LAR
Sbjct: 84 YTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALAR 129
>At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11)
identical to SP:Q9S9Z8, 14-3-3-like protein GF14 omicron
(General regulatory factor 11){Arabidopsis thaliana}
Length = 255
Score = 35.5 bits (78), Expect = 0.038
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = +1
Query: 388 SSGTWPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAG 567
S+ T T P+ L L SV P R CH RA+ + E+D L K
Sbjct: 159 SASTELSTTHPIRLGLALNFSVFYYEILNSPERACHLAKRAFDEAIAELDSLNEDSYKDS 218
Query: 568 RAIPQVTRSNVTGW 609
I Q+ R N+T W
Sbjct: 219 TLIMQLLRDNLTLW 232
>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
thaliana]
Length = 268
Score = 35.5 bits (78), Expect = 0.038
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R CH +A+ + E+D L+ K I Q+ R
Sbjct: 172 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLR 231
Query: 592 SNVTGW 609
N+T W
Sbjct: 232 DNLTLW 237
>At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical to
GF14 mu GI:3551052, SP:Q96299 from [Arabidopsis
thaliana]
Length = 263
Score = 34.3 bits (75), Expect = 0.088
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R CH +A+ + E+D L K I Q+ R
Sbjct: 169 THPIRLGLALNFSVFYYEIMNAPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228
Query: 592 SNVTGW 609
N+T W
Sbjct: 229 DNLTLW 234
>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general
regulatory factor 1 (GRF1) identical to 14-3-3 protein
GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
thaliana]
Length = 267
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L K I Q+ R
Sbjct: 174 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLR 233
Query: 592 SNVTGW 609
N+T W
Sbjct: 234 DNLTLW 239
>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
to GF14omega isoform GI:487791 from [Arabidopsis
thaliana]
Length = 259
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L K I Q+ R
Sbjct: 169 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLR 228
Query: 592 SNVTGW 609
N+T W
Sbjct: 229 DNLTLW 234
>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
to GF14 protein phi chain GI:1493805, SP:P46077 from
[Arabidopsis thaliana]
Length = 267
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C+ +A+ + E+D L K I Q+ R
Sbjct: 175 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLR 234
Query: 592 SNVTGW 609
N+T W
Sbjct: 235 DNLTLW 240
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 458 SCTLSIRIVSNHSGEVSRGHVPDDLYHPFSLQDCTQWYPQA*LQQASHFQLQELLSFHNK 279
+C +I+ HSGE S DD+ S C+ + P+A +Q F + + H K
Sbjct: 95 NCYYAIKRHGKHSGEASGSAKEDDI---VSCCFCSSFVPEAKPKQLDPFDMYQQFKIHQK 151
Query: 278 Q 276
+
Sbjct: 152 E 152
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
+G+ MP+G M GTI+ N+E G ++ R
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVR 89
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
+G+ MP+G M GTI+ N+E G ++ R
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVR 89
>At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1)
identical to 14-3-3 protein GF14 psi GI:1168200,
SP:P42644
Length = 255
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C +A+ + E+D L K I Q+ R
Sbjct: 168 THPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 227
Query: 592 SNVTGW 609
N+T W
Sbjct: 228 DNLTLW 233
>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
thaliana]
Length = 265
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
T P+ L L SV P R C +A+ + E+D L K I Q+ R
Sbjct: 169 THPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 228
Query: 592 SNVTGW 609
N+T W
Sbjct: 229 DNLTLW 234
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 631 PTPRYIMASQLRLTLLLVVWPFQLSKIGLSIRPPPATIPTML-CCLDGRTFL 479
PT ++++ LR+ + + + + L +RP T +L CC DGR+ L
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL 661
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 631 PTPRYIMASQLRLTLLLVVWPFQLSKIGLSIRPPPATIPTML-CCLDGRTFL 479
PT ++++ LR+ + + + + L +RP T +L CC DGR+ L
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL 661
>At3g30520.1 68416.m03863 hypothetical protein
Length = 397
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 708 DQWKPYPIMCDW-LPPPVRECSTGFNGQHHVTLWPASYV*PCYLWYG 571
D+W+ P + W PP V +C T N H T A P + YG
Sbjct: 293 DKWRTPPNVAQWGTPPNVAQCRTPPNAPHWGTPPNAHGTTPTNVQYG 339
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPI 554
A NF ++G +P T V P+ A+ + P + +G GGG + I
Sbjct: 82 AKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129
>At4g24900.1 68417.m03564 expressed protein
Length = 421
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 408 GNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTTSN 587
G+F++V + D R + K+P +K+ P+R VG A R I GH T +
Sbjct: 305 GDFSSVQLNQSDVARFQAKVPGKNRKLNPNR----VG-AAWAERRKIEIEMEKSGHVTKS 359
Query: 588 KVKRNWL 608
+ +WL
Sbjct: 360 NIDPDWL 366
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,818
Number of Sequences: 28952
Number of extensions: 417048
Number of successful extensions: 1046
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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