Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm...    31   1.2  
At1g62190.1 68414.m07015 expressed protein                             29   3.6  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    29   4.7  
At3g54620.1 68416.m06043 bZIP transcription factor family protei...    28   8.3  

>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
           gamma-adaptin GI:2765190 from [Homo sapiens]; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 867

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 667 IQPGAALKSLRKNHHGAVVTGVR*HRRYCR 578
           I PGAAL  L++ HHG ++TGV      C+
Sbjct: 179 INPGAAL--LKEKHHGVLITGVHLCTEICK 206


>At1g62190.1 68414.m07015 expressed protein
          Length = 295

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 571 HQFCSIFCVILLL*QQPHGGSYGGTLTLPPAV 666
           H F S F   +LL QQ H  ++G    LPP V
Sbjct: 183 HSFVSTFAFCILLSQQFHAWAHGTKSKLPPLV 214


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 354 LGHNRRCGISVRWCSGVRICWASS 283
           +G +R CG  VRW +G  +CW ++
Sbjct: 231 VGEDRGCG--VRWSNGTVVCWGNN 252


>At3g54620.1 68416.m06043 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 403

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 645 SPSVRTTMGLLLQE*DDTEDTAELMVLENNRRCSVSYSGSDR 520
           SP    ++  L +  D+TED  E+   +N+RR  V   G +R
Sbjct: 71  SPPPVQSLSRLEETVDETEDVVEIQKPQNHRRLPVDDQGKNR 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,623
Number of Sequences: 28952
Number of extensions: 294177
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)