Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30064
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04920.1 68418.m00519 vacuolar protein sorting 36 family prot...    29   4.0  
At2g14800.1 68415.m01677 hypothetical protein                          28   9.1  

>At5g04920.1 68418.m00519 vacuolar protein sorting 36 family protein
           / VPS36 family protein contains Pfam PF04132: Vacuolar
           protein sorting 36
          Length = 440

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 710 FKLEPNVY-TILHFIKKFGNHGKWI 639
           F L P +  T LH +K+FG +G+WI
Sbjct: 408 FNLFPEIDPTNLHIVKEFGTYGEWI 432


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = -2

Query: 815 KI*NIKFGNLNPGHPEILPVGTQIVKWTFWWLENKFKLEPNVYTILHFIKKFG------- 657
           K   +K GN    H     +GT  + W  WWL+N  K++ ++  +    + FG       
Sbjct: 362 KFKQVKEGNKQQ-HNLFRQMGTITILW--WWLQNGSKVQWHILIVKRVSEIFGELKRVQA 418

Query: 656 -NHGKWIYTHFFQHYSTTVHFK 594
            N   ++ ++   HY  + HFK
Sbjct: 419 SNAIIYVLSYGNHHYKLSWHFK 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,426
Number of Sequences: 28952
Number of extensions: 332780
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)