Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20002
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde...    29   3.2  
At2g21930.1 68415.m02605 F-box family protein contains F-box dom...    29   4.2  
At5g39590.1 68418.m04795 expressed protein                             27   9.7  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    27   9.7  

>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
           susceptibility protein (PMR6) identical to powdery
           mildew susceptibility protein [Arabidopsis thaliana]
           GI:22506901; similar to pectate lyase 2 GP:6606534 from
           [Musa acuminata]
          Length = 501

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 416 TLLSLTEGVSVTIETDFGYKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSS 252
           TLLS T+ +++T+        +VAL+ +   +ES  R++ S P +  + S + SS
Sbjct: 18  TLLSATKPLNLTLPHQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSS 72


>At2g21930.1 68415.m02605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 286 GGTECFFLTVDS*RSSTQYKATVALYPKSVSIVTLTPSV 402
           GG  CFF  +D   S++  K T  +    + + T  PSV
Sbjct: 22  GGIHCFFSLIDQGESTSSSKPTYLMNCPHLQLKTFAPSV 60


>At5g39590.1 68418.m04795 expressed protein
          Length = 542

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 318 LMTVEYTVQGDSGFVPKISFDSN-ANPFGQGK*SFSKMFSGLFVCFVSEY 464
           L+ V Y    ++GF PK+ F+S+ A+    G  S S++   L++C+   +
Sbjct: 122 LLRVYYVTAKNAGFSPKLEFESDEADCKINGSISVSELLVFLWMCWTMSW 171


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
            family protein contains Pfam PF00400: WD domain, G-beta
            repeat; contains Pfam PF00069: Protein kinase domain;
            contains PF02985: HEAT repeat; similar to adaptor protein
            (GI:1817584) [Homo sapiens]; similar to VPS15 protein
            (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 392  VSVTIETDFGYKATVALYCVLDRHESTVRKKHSVPPNDFAFSVTDSSRRSTMSSQDLQRR 213
            +S T   D G+K    L   L  H S V    +   + F  S +D S      S+ L++ 
Sbjct: 1057 LSRTSVPDSGWKPRGVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDSRKLEKD 1116

Query: 212  ICIRT 198
            I  R+
Sbjct: 1117 ISFRS 1121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,683
Number of Sequences: 28952
Number of extensions: 275416
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)