Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00011
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 123 1e-28
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 120 1e-27
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 120 1e-27
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 109 1e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 101 7e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 100 1e-21
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 100 1e-21
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 100 1e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 91 7e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 90 1e-18
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 89 3e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 87 9e-18
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 87 9e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 87 1e-17
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 87 1e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 84 8e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 83 1e-16
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 77 1e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 75 4e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 70 2e-12
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 68 6e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 67 1e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 66 2e-11
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 66 2e-11
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 64 1e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 64 1e-10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 64 1e-10
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 63 2e-10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 62 3e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 1e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 60 2e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 59 4e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 58 8e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 57 1e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 57 1e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 57 1e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 56 2e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 56 2e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 4e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 55 4e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 55 4e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 6e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 55 6e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 52 3e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 52 5e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 52 5e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 51 7e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 51 7e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 2e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 2e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 49 4e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 48 9e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 45 6e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g28600.1 68415.m03476 expressed protein 37 0.012
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 37 0.017
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 37 0.017
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.029
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 36 0.029
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 32 0.36
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.47
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 32 0.47
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 32 0.47
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 31 0.62
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 31 1.1
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.4
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.4
At5g19040.1 68418.m02264 adenylate isopentenyltransferase 5 / cy... 30 1.9
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 3.3
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put... 29 4.4
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 28 5.8
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 28 5.8
At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic... 28 5.8
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote... 28 7.7
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 123 bits (297), Expect = 1e-28
Identities = 57/83 (68%), Positives = 67/83 (80%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIAT
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 190 PGRLIDFLEKGTTNLQRCTYLVL 258
PGRLID +E TNL+R TYLVL
Sbjct: 230 PGRLIDMMESNNTNLRRVTYLVL 252
Score = 114 bits (275), Expect = 5e-26
Identities = 55/94 (58%), Positives = 68/94 (72%)
Frame = +3
Query: 222 HNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG 401
+ L V LDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ +L
Sbjct: 241 NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY 300
Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+ ++ IGS L AN I QIVD+ E +K NKL
Sbjct: 301 NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKL 334
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/71 (47%), Positives = 54/71 (76%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G++ ++F++TK+ + I+R +R GWPA+ +HGDK+Q ER VL +F+ G++ I+ ATDV
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 722 AARGLDVDGIQ 754
AARGLDV ++
Sbjct: 404 AARGLDVKDVK 414
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 120 bits (288), Expect = 1e-27
Identities = 58/101 (57%), Positives = 70/101 (69%)
Frame = +3
Query: 222 HNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG 401
H L V LDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L
Sbjct: 307 HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLR 366
Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKL 524
D + IGS L AN +I Q+++I EK N+L K+L
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 117 bits (281), Expect = 1e-26
Identities = 58/82 (70%), Positives = 65/82 (79%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATP
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATP 296
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GRLID LE TNL+R TYLVL
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVL 318
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/71 (59%), Positives = 54/71 (76%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G+K +IFVETKR + ++R +R GWPA+ +HGDKTQ ER VL +FK GR+ I+ ATDV
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
Query: 722 AARGLDVDGIQ 754
AARGLDV I+
Sbjct: 470 AARGLDVKDIK 480
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 120 bits (288), Expect = 1e-27
Identities = 58/101 (57%), Positives = 70/101 (69%)
Frame = +3
Query: 222 HNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG 401
H L V LDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L
Sbjct: 307 HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLR 366
Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKL 524
D + IGS L AN +I Q+++I EK N+L K+L
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL 407
Score = 117 bits (281), Expect = 1e-26
Identities = 58/82 (70%), Positives = 65/82 (79%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATP
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATP 296
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GRLID LE TNL+R TYLVL
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVL 318
Score = 90.6 bits (215), Expect = 1e-18
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G+K +IFVETKR + ++R +R GWPA+ +HGDKTQ ER VL +FK GR+ I+ ATDV
Sbjct: 410 GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV 469
Query: 722 AARGLDVDGIQ 754
AARGL GI+
Sbjct: 470 AARGLVSSGIR 480
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 109 bits (263), Expect = 1e-24
Identities = 52/103 (50%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
V + LDEADRMLDMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A D L + +Q+N
Sbjct: 582 VSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVN 641
Query: 420 IGSL-QLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
IG + +L+AN I Q V++ + EKE +L + ++ ++
Sbjct: 642 IGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVI 684
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/82 (54%), Positives = 58/82 (70%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
+GP L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATP
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATP 565
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GRL D LE + Q+ + LVL
Sbjct: 566 GRLNDILEMKMIDFQQVSLLVL 587
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/81 (51%), Positives = 61/81 (75%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L++I +SQE G+K IIF TKR + ++R++ R+ + AV +HGDKTQ ER VL QF+ G
Sbjct: 670 LEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSG 728
Query: 692 RASILVATDVAARGLDVDGIQ 754
++ +L+ATDVAARGLD+ I+
Sbjct: 729 KSCVLIATDVAARGLDIKDIR 749
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 101 bits (241), Expect = 7e-22
Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L V LDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A D L +
Sbjct: 373 LHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPA 432
Query: 411 QINIGSL-QLSANHNILQIVDICQEHEKENKL 503
Q+NIG++ +L AN +I Q +++ EK ++L
Sbjct: 433 QVNIGNVDELVANKSITQTIEVLAPMEKHSRL 464
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
GP LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPG
Sbjct: 301 GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPG 360
Query: 196 RLIDFLEKGTTNLQRCTYLVL 258
RL D LE +L + +YLVL
Sbjct: 361 RLNDILEMKRISLHQVSYLVL 381
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/81 (55%), Positives = 60/81 (74%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ER +VL QF+ G
Sbjct: 464 LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSG 522
Query: 692 RASILVATDVAARGLDVDGIQ 754
R +LVATDVAARGLDV I+
Sbjct: 523 RTPVLVATDVAARGLDVKDIR 543
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 100 bits (239), Expect = 1e-21
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 196 RLIDFLEKGTTNLQRCTYLVL 258
RL D LE +L++ +YLVL
Sbjct: 290 RLNDILEMRRISLRQISYLVL 310
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L + LDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L +
Sbjct: 302 LRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPA 361
Query: 411 QINIGSL-QLSANHNILQIVDICQEHEKENKL 503
Q+NIG++ +L AN +I Q +++ EK+ +L
Sbjct: 362 QVNIGNVDELVANKSITQHIEVVAPMEKQRRL 393
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ER VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 692 RASILVATDVAARGLDVDGIQ 754
R +LVATDVAARGLDV I+
Sbjct: 452 RTPVLVATDVAARGLDVKDIR 472
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 100 bits (239), Expect = 1e-21
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 196 RLIDFLEKGTTNLQRCTYLVL 258
RL D LE +L++ +YLVL
Sbjct: 290 RLNDILEMRRISLRQISYLVL 310
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L + LDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L +
Sbjct: 302 LRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPA 361
Query: 411 QINIGSL-QLSANHNILQIVDICQEHEKENKL 503
Q+NIG++ +L AN +I Q +++ EK+ +L
Sbjct: 362 QVNIGNVDELVANKSITQHIEVVAPMEKQRRL 393
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ER VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 692 RASILVATDVAARGLDVDGIQ 754
R +LVATDVAARGLDV I+
Sbjct: 452 RTPVLVATDVAARGLDVKDIR 472
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 100 bits (239), Expect = 1e-21
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPG
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPG 289
Query: 196 RLIDFLEKGTTNLQRCTYLVL 258
RL D LE +L++ +YLVL
Sbjct: 290 RLNDILEMRRISLRQISYLVL 310
Score = 98.7 bits (235), Expect = 4e-21
Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L + LDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L +
Sbjct: 302 LRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPA 361
Query: 411 QINIGSL-QLSANHNILQIVDICQEHEKENKL 503
Q+NIG++ +L AN +I Q +++ EK+ +L
Sbjct: 362 QVNIGNVDELVANKSITQHIEVVAPMEKQRRL 393
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +2
Query: 512 LQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEG 691
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ER VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 692 RASILVATDVAARGLDVDGIQ 754
R +LVATDVAARGLDV I+
Sbjct: 452 RTPVLVATDVAARGLDVKDIR 472
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 91.1 bits (216), Expect = 7e-19
Identities = 43/102 (42%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG-D 404
+L+ V LDEADRMLDMGFE +R I+ RQ +M+SATWP +V KLA++++ +
Sbjct: 262 RLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPN 321
Query: 405 YIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDK 530
I++ IGS+ L+ANH+++QI+++ E ++ +L +K K
Sbjct: 322 PIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHK 363
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 180
G++ P LVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IV
Sbjct: 186 GSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIV 245
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVL 258
I TPGRL D +E L +++VL
Sbjct: 246 IGTPGRLRDLIESNVLRLSDVSFVVL 271
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKE 688
LL++ +SQ+ + ++F K +AE + R +++ GW AV +HG+K Q ER L FKE
Sbjct: 357 LLEKYHKSQKN--RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKE 414
Query: 689 GRASILVATDVAARGLDVDGIQ 754
G +LVATDVAARGLD+ ++
Sbjct: 415 GSCPLLVATDVAARGLDIPDVE 436
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/73 (56%), Positives = 58/73 (79%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
LDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA + L D I++ +G +
Sbjct: 381 LDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVG 440
Query: 435 LSANHNILQIVDI 473
+ AN +I Q+V++
Sbjct: 441 M-ANEDITQVVNV 452
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 7 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 186
R +GPI ++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+A
Sbjct: 298 RDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVA 357
Query: 187 TPGRLIDFLEKGTTNLQRCTYLVL 258
TPGRLID L+ + R +YLVL
Sbjct: 358 TPGRLIDMLKMKALTMMRASYLVL 381
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
++F K + I + + +HGDK Q R E L +FK G +L+ATDVAARG
Sbjct: 477 LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARG 536
Query: 734 LDVDGIQ 754
LD+ ++
Sbjct: 537 LDIKSLK 543
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/86 (48%), Positives = 58/86 (67%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 180
G RG P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I+
Sbjct: 219 GVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDIL 278
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVL 258
+ATPGRL D LE+G +LQ +L L
Sbjct: 279 VATPGRLNDLLERGRVSLQMVRFLAL 304
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 IN*FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMWSATWP 365
+N L +G L V +LDEADRMLDMGFEPQIRKI++Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 366 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L
Sbjct: 345 REIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHL 389
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/71 (52%), Positives = 49/71 (69%)
Frame = +2
Query: 530 SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILV 709
+Q A T++FVETK+ A+ + + G+PA +HGD++QQER L FK GR ILV
Sbjct: 401 NQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILV 460
Query: 710 ATDVAARGLDV 742
ATDVAARGLD+
Sbjct: 461 ATDVAARGLDI 471
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 87.4 bits (207), Expect = 9e-18
Identities = 42/91 (46%), Positives = 63/91 (69%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L V +DEADRM DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA L +
Sbjct: 544 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPV 603
Query: 411 QINIGSLQLSANHNILQIVDICQEHEKENKL 503
+I +G + N +I Q+V+I E E+ ++L
Sbjct: 604 EIQVGGRSV-VNKDITQLVEIRPESERFSRL 633
Score = 79.0 bits (186), Expect = 3e-15
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ T
Sbjct: 467 GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCT 526
Query: 190 PGRLIDFL--EKG-TTNLQRCTYLVL 258
PGR+ID L G TNL+R TYLV+
Sbjct: 527 PGRMIDILCTSSGKITNLRRVTYLVM 552
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 680 FKEGRASILVATDVAARGLDVDGIQ 754
FK ++L+AT VAARGLDV ++
Sbjct: 660 FKSDVCNLLIATSVAARGLDVKELE 684
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 87.4 bits (207), Expect = 9e-18
Identities = 46/106 (43%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 IN*FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWP 365
+N L + + + +LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++SAT+P
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFP 357
Query: 366 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L
Sbjct: 358 REIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHL 402
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 180
G+R P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I+
Sbjct: 232 GSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDIL 291
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVL 258
+ATPGRL D LE+ ++Q +L L
Sbjct: 292 VATPGRLNDLLERARVSMQMIRFLAL 317
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +2
Query: 545 AKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVA 724
A T++FVETKR A+ + + G+PA +HGD+TQQER L FK GR ILVATDVA
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 725 ARGLDV 742
ARGLD+
Sbjct: 479 ARGLDI 484
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 IN*FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWP 365
+N L + + + +LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 366 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
++++LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHL 394
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/86 (44%), Positives = 55/86 (63%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 180
G+R P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I+
Sbjct: 224 GSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDIL 283
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVL 258
+ATPGRL D LE+ ++Q +L L
Sbjct: 284 VATPGRLNDLLERARVSMQMIRFLAL 309
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/91 (45%), Positives = 58/91 (63%)
Frame = +2
Query: 470 YLSRT*KRK*IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKT 649
++ + KR + LL ++Q+ + T++FVETKR A+ + + +PA +HGD+T
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRT 443
Query: 650 QQERAEVLYQFKEGRASILVATDVAARGLDV 742
QQER L FK GR ILVATDVAARGLD+
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDI 474
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 IN*FLGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWP 365
+N L + + + +LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFP 349
Query: 366 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
++++LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 350 SQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHL 394
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/86 (44%), Positives = 55/86 (63%)
Frame = +1
Query: 1 GTRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 180
G+R P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I+
Sbjct: 224 GSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDIL 283
Query: 181 IATPGRLIDFLEKGTTNLQRCTYLVL 258
+ATPGRL D LE+ ++Q +L L
Sbjct: 284 VATPGRLNDLLERARVSMQMIRFLAL 309
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/91 (45%), Positives = 58/91 (63%)
Frame = +2
Query: 470 YLSRT*KRK*IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKT 649
++ + KR + LL ++Q+ + T++FVETKR A+ + + +PA +HGD+T
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRT 443
Query: 650 QQERAEVLYQFKEGRASILVATDVAARGLDV 742
QQER L FK GR ILVATDVAARGLD+
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDI 474
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 84.2 bits (199), Expect = 8e-17
Identities = 42/82 (51%), Positives = 53/82 (64%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
+GP A+V+APTRELAQQI++ F H R T + GG EQ + +G EIVIATP
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GRLID LE+ L +C Y+VL
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVL 469
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +2
Query: 536 EPGAKT-IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVA 712
E G KT I+FV TK+ + I++N+ + G+ +HG K+Q++R L F+ R ++LVA
Sbjct: 573 ELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVA 632
Query: 713 TDVAARGLDVDGI 751
TDV RG+D+ +
Sbjct: 633 TDVVGRGIDIPDV 645
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWPKEVKKL 383
LDEADRM+DMGFEPQ+ +++ ++P+ R T M+SAT P V++L
Sbjct: 469 LDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERL 528
Query: 384 AEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
A YL + + + IG+ + + I Q V + +E EK +L +L + +V
Sbjct: 529 ARKYLRNPVVVTIGTAGKTTD-LISQHVIMMKESEKFFRLQKLLDELGEKTAIV 581
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/87 (44%), Positives = 60/87 (68%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L V +DEADRM DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA L +
Sbjct: 677 LRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPV 736
Query: 411 QINIGSLQLSANHNILQIVDICQEHEK 491
+I +G + N +I Q+V++ E ++
Sbjct: 737 EIQVGGRSV-VNKDITQLVEVRPESDR 762
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
GDGPI LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ T
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 659
Query: 190 PGRLIDFL--EKG-TTNLQRCTYLVL 258
PGR+ID L G TNL+R T+LV+
Sbjct: 660 PGRMIDILCTSSGKITNLRRVTFLVM 685
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/82 (35%), Positives = 52/82 (63%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKE 688
LL+ +G+ E G K ++FV+++ K + + R++ + +P + +HG K Q +R + FK
Sbjct: 766 LLELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKN 824
Query: 689 GRASILVATDVAARGLDVDGIQ 754
++L+AT VAARGLDV ++
Sbjct: 825 DVCNLLIATSVAARGLDVKELE 846
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 183
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR+ID +++G NL ++VL
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQFVVL 256
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G K I+F +TKR A+ +S + R + +HGD +Q +R L F++G +ILVATDV
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 722 AARGLDVDGI 751
AARGLDV +
Sbjct: 408 AARGLDVPNV 417
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/69 (34%), Positives = 43/69 (62%)
Frame = +3
Query: 216 KGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 395
+G L+ V LDEAD+ML +GF + I+E++ RQ++M+SAT P ++ L + Y
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKY 302
Query: 396 LGDYIQINI 422
L + + +++
Sbjct: 303 LNNPLTVDL 311
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 183
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR+ID +++G NL ++VL
Sbjct: 244 GTPGRIIDLMKRGALNLSEVQFVVL 268
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G K I+F +TKR A+ ++ + + + +HGD +Q +R L F++G SILVATDV
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 722 AARGLDVDGI 751
AARGLDV +
Sbjct: 420 AARGLDVPNV 429
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/69 (34%), Positives = 43/69 (62%)
Frame = +3
Query: 216 KGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 395
+G L+ V LDEAD+ML +GF + I++++ RQ++M+SAT P ++ L + Y
Sbjct: 255 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKY 314
Query: 396 LGDYIQINI 422
L + + I++
Sbjct: 315 LNNPLTIDL 323
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGV 171
G+GPI L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV
Sbjct: 220 GEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
Query: 172 EIVIATPGRLIDFLEKGTTNLQRCTYLVL 258
IV+ATPGRL D L K +L C YL L
Sbjct: 280 HIVVATPGRLKDMLAKKKMSLDACRYLTL 308
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/94 (35%), Positives = 56/94 (59%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L K L A +LDEADR++D+GFE IR++ + + RQTL++SAT P +++ A
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFAR 352
Query: 390 DYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 491
L + +N+G +AN +++Q V+ ++ K
Sbjct: 353 SALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 385
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/74 (39%), Positives = 41/74 (55%)
Frame = +2
Query: 533 QEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVA 712
Q+ +IF E K + I + G AV +HG K Q++R + FK G+ +LVA
Sbjct: 394 QKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVA 453
Query: 713 TDVAARGLDVDGIQ 754
TDVA++GLD IQ
Sbjct: 454 TDVASKGLDFPDIQ 467
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 68.1 bits (159), Expect = 6e-12
Identities = 35/80 (43%), Positives = 48/80 (60%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
+ID +E + L YLVL
Sbjct: 239 IIDLIEGRSLKLGEVEYLVL 258
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +2
Query: 503 KCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQF 682
+ +L ++ G KTI+F +TKR A+ +S + +HGD +Q +R L F
Sbjct: 338 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAF 396
Query: 683 KEGRASILVATDVAARGLDVDGI 751
++G+ ++LVATDVA+RGLD+ +
Sbjct: 397 RQGKFTVLVATDVASRGLDIPNV 419
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/65 (43%), Positives = 42/65 (64%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 407
+L V LDEAD+ML +GFE + I+E + RQ++++SAT P VKKLA YL +
Sbjct: 249 KLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNP 308
Query: 408 IQINI 422
+ I++
Sbjct: 309 LNIDL 313
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGV 171
G+GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV
Sbjct: 171 GEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
Query: 172 EIVIATPGRLIDFLEKGTTNLQRCTYLVL 258
IV+ATPGRL D L K +L C L L
Sbjct: 231 HIVVATPGRLKDILAKKKMSLDACRLLTL 259
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/94 (35%), Positives = 56/94 (59%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L K L A + +LDEADR++D+GFE IR + + + RQTL++SAT P +++ A
Sbjct: 244 LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFAT 303
Query: 390 DYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 491
L + +N+G +AN +++Q V+ ++ K
Sbjct: 304 SALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 336
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/74 (39%), Positives = 41/74 (55%)
Frame = +2
Query: 533 QEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVA 712
Q+ +IF E K + I + G AV +HG K Q++R + FK G+ +LVA
Sbjct: 345 QKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVA 404
Query: 713 TDVAARGLDVDGIQ 754
TDVA++GLD IQ
Sbjct: 405 TDVASKGLDFPDIQ 418
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
++D L K T L VL
Sbjct: 247 VVDLLSKHTIELDNIMTFVL 266
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L K +L + F LDE D ML GF Q+ +I + + Q L++SAT +EV+K+
Sbjct: 251 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGG 309
Query: 390 DYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+ I ++IG+ N + Q+ +K+ KL
Sbjct: 310 SLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKL 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRY-GWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAAR 730
+++V ++ A+ ++ I G A+ +HG+K +ER +V+ F G +LV+T V R
Sbjct: 361 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 420
Query: 731 GLDV 742
G+D+
Sbjct: 421 GVDL 424
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/80 (41%), Positives = 45/80 (56%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 198
P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
++D L K T L VL
Sbjct: 110 VVDLLSKHTIELDNIMTFVL 129
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +3
Query: 210 LGKGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L K +L + F LDE D ML GF Q+ +I + + Q L++SAT +EV+K+
Sbjct: 114 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGG 172
Query: 390 DYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+ I ++IG+ N + Q+ +K+ KL
Sbjct: 173 SLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKL 209
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRY-GWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAAR 730
+++V ++ A+ ++ I G A+ +HG+K +ER +V+ F G +LV+T V R
Sbjct: 224 VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGR 283
Query: 731 GLDV 742
G+D+
Sbjct: 284 GVDL 287
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +1
Query: 4 TRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 183
T+ P +VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Query: 184 ATPGRLIDFLEKGTTNLQRCTYLVL 258
TPGR++ +E+G YLVL
Sbjct: 245 GTPGRILQHIEEGNMVYGDIAYLVL 269
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 500 IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQ 679
++ LLQ + S G+K ++F T + + + V HG+ ++R E L +
Sbjct: 356 LEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKK 415
Query: 680 FK--EGRASILVATDVAARGLDVD 745
FK EG LV TD+AARGLD+D
Sbjct: 416 FKDEEGDCPTLVCTDLAARGLDLD 439
Score = 34.3 bits (75), Expect = 0.088
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRP------DR--QTLMWSATWPKEVKKLAED 392
LDEAD M D GF P+IRK + + D+ QT++ +AT V+KL ++
Sbjct: 269 LDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDE 322
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/78 (43%), Positives = 44/78 (56%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 205 DFLEKGTTNLQRCTYLVL 258
D L++ + VL
Sbjct: 170 DMLKRQSLRADNIKMFVL 187
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+++IFV T+RK + ++ +R HGD Q R ++ +F+ G + +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 340 RGIDVQQV 347
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
+ +F LDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 182 IKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/78 (43%), Positives = 43/78 (55%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 205 DFLEKGTTNLQRCTYLVL 258
D L + + VL
Sbjct: 172 DLLRRQSLRADAIKMFVL 189
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+++IFV T+RK + ++ +R HGD Q R ++ +F+ G + +L+ TD+ A
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 342 RGIDVQQV 349
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
A+ +F LDEAD ML GF+ QI I + + Q ++SAT P E ++ ++ ++I
Sbjct: 183 AIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRI 242
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 205 DFLEK 219
D L +
Sbjct: 170 DMLRR 174
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+++IFV T+RK + ++ +R HGD Q R ++ +F+ G + +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 340 RGIDVQQV 347
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
+ +F LDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 182 IKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IF TKRK + +S +R + + MHGD Q+ER ++ +F+ G + +L+ TDV A
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWA 335
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 336 RGIDVQQV 343
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 201
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRV 164
Query: 202 IDFLEKGTTNLQRCTYLVL 258
D +++ + + L+L
Sbjct: 165 CDMIKRRSLRTRAIKLLIL 183
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
A+ + LDE+D ML GF+ QI + + PD Q + SAT P E+ ++ ++ + ++I
Sbjct: 177 AIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI 236
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +1
Query: 10 GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 189
G P LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ T
Sbjct: 172 GRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGT 231
Query: 190 PGRLIDFLEKGTTNLQRCTYLVL 258
PGR+ D +E+ + + VL
Sbjct: 232 PGRIKDHIERQNLDFSYLQFRVL 254
Score = 54.4 bits (125), Expect = 8e-08
Identities = 33/104 (31%), Positives = 58/104 (55%)
Frame = +2
Query: 443 KSQHSSNCRYLSRT*KRK*IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWP 622
K + S++ R+++ + + L+ +I G +TIIF ETK + +S +
Sbjct: 317 KMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG---- 372
Query: 623 AVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGIQ 754
+ +HG+ Q +R L F+ G+ + LVAT+VAARGLD++ +Q
Sbjct: 373 SRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQ 416
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEDYL-GDYIQIN-I 422
LDEAD ML MGF + I+ ++ QTL++SAT P VK ++ +L D I+ +
Sbjct: 254 LDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLV 313
Query: 423 GSLQLSANHNILQIVDICQE 482
G+ ++ A++++ I C +
Sbjct: 314 GNDKMKASNSVRHIAIPCNK 333
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+TIIFV+TK A+ + + + G+ +HG+ T+ +R +++ +FKE +L+ATDV A
Sbjct: 342 QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIA 401
Query: 728 RGLD 739
RG D
Sbjct: 402 RGFD 405
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 192
P AL + PTRELA Q +V G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 193 GRL 201
G L
Sbjct: 223 GTL 225
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/68 (36%), Positives = 45/68 (66%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ IIF T++K + ++ +R + MHGDK Q+ER +++ QF+ ++ +L+A+DV A
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWA 322
Query: 728 RGLDVDGI 751
RG+DV +
Sbjct: 323 RGIDVQTV 330
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +++G+ + LVL
Sbjct: 153 DMIKRGSLQTKAVKLLVL 170
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/96 (30%), Positives = 50/96 (52%)
Frame = +3
Query: 216 KGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 395
+G Q AV + LDE+D ML G + QI + + D Q + SAT P+E+ ++ E +
Sbjct: 157 RGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKF 216
Query: 396 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKL 503
+ D ++I + +L+ VD+ +E K + L
Sbjct: 217 MTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTL 252
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +3
Query: 225 NQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-G 401
++L A+ +F +DEAD +LD+GF+ + KII+ + RQ+L++SAT PKEV+++++ L
Sbjct: 527 SRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKR 586
Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHE 488
D+ I+ L H+ ++ I HE
Sbjct: 587 DHSYIDTIGLGCVETHDKVKQSCIVAPHE 615
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 1 GTRGDGPI-ALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 171
G PI L+L PTRELA QI + A H T + G + +Q R
Sbjct: 446 GVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPC 505
Query: 172 EIVIATPGRLIDFLE 216
+I+IATPGRL+D +E
Sbjct: 506 QILIATPGRLLDHIE 520
Score = 34.7 bits (76), Expect = 0.067
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +2
Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
P K I+F T + +R +H K Q R V +FKE ILV +D
Sbjct: 633 PDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSD 692
Query: 719 VAARGLD 739
V+ARG++
Sbjct: 693 VSARGMN 699
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +3
Query: 225 NQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-G 401
++L A+ +F +DEAD +LD+GF + KII+ + RQ+L++SAT PKEV+++++ L
Sbjct: 480 SRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKR 539
Query: 402 DYIQINIGSLQLSANHNILQIVDICQEHE 488
D+ I+ L H+ ++ I HE
Sbjct: 540 DHSYIDTIGLGCVETHDKVRQSCIVAPHE 568
Score = 42.7 bits (96), Expect = 3e-04
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 1 GTRGDGPI-ALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 171
G PI AL+L PTRELA QI + A H T + G K +Q R
Sbjct: 399 GVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPC 458
Query: 172 EIVIATPGRLIDFLE 216
+I+IATPGRL+D +E
Sbjct: 459 QILIATPGRLLDHIE 473
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +2
Query: 539 PGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
P K I+F T + +R +H K Q R V +FKE ILV +D
Sbjct: 586 PDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSD 645
Query: 719 VAARGLD 739
V+ARG++
Sbjct: 646 VSARGMN 652
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IFV++ +A +++ + +P++C+H +Q+ER FKEG ILVATD+
Sbjct: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 349
Query: 728 RGLDVDGI 751
RG+D++ +
Sbjct: 350 RGIDIERV 357
Score = 51.2 bits (117), Expect = 7e-07
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 407
L V F LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP 247
Query: 408 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLD 527
++I + H ++Q E EK KLN LD
Sbjct: 248 MEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALD 287
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 192
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GR++ + +L+ + +L
Sbjct: 175 GRVLALAREKDLSLKNVRHFIL 196
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IFV++ +A +++ + +P++C+H +Q+ER FKEG ILVATD+
Sbjct: 207 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 266
Query: 728 RGLDVDGI 751
RG+D++ +
Sbjct: 267 RGIDIERV 274
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 407
L V F LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 105 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP 164
Query: 408 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLD 527
++I + H ++Q E EK KLN LD
Sbjct: 165 MEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALD 204
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 192
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GR++ + +L+ + +L
Sbjct: 92 GRVLALAREKDLSLKNVRHFIL 113
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+ +IFV++ +A +++ + +P++C+H +Q+ER FKEG ILVATD+
Sbjct: 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVG 349
Query: 728 RGLDVDGI 751
RG+D++ +
Sbjct: 350 RGIDIERV 357
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 407
L V F LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP 247
Query: 408 IQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLD 527
++I + H ++Q E EK KLN LD
Sbjct: 248 MEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALD 287
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERG--VEIVIATP 192
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 193 GRLIDFLEKGTTNLQRCTYLVL 258
GR++ + +L+ + +L
Sbjct: 175 GRVLALAREKDLSLKNVRHFIL 196
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +KG L+ C LV+
Sbjct: 255 DLTKKGVCVLKDCAMLVM 272
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/97 (30%), Positives = 54/97 (55%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L IN+ Q
Sbjct: 272 MDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-Q 330
Query: 435 LSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
L+ + Q +E +K + LN KL ++++
Sbjct: 331 LTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSII 366
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + + E +++ I G+ +H Q R V ++F+ G LV TD+
Sbjct: 363 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFT 422
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 423 RGIDIQAV 430
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +KG L+ C LV+
Sbjct: 255 DLTKKGVCVLKDCAMLVM 272
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/97 (30%), Positives = 54/97 (55%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L IN+ Q
Sbjct: 272 MDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMD-Q 330
Query: 435 LSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
L+ + Q +E +K + LN KL ++++
Sbjct: 331 LTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSII 366
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + + E +++ I G+ +H Q R V ++F+ G LV TD+
Sbjct: 363 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFT 422
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 423 RGIDIQAV 430
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +KG L+ C+ LV+
Sbjct: 262 DLTKKGVCVLKDCSVLVM 279
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/110 (30%), Positives = 56/110 (50%)
Frame = +3
Query: 216 KGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 395
KG L + +DEAD++L F+P + +I + RQ LM+SAT+P VK + +
Sbjct: 266 KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRF 325
Query: 396 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
L + IN+ +L+ I Q +E +K + LN KL ++++
Sbjct: 326 LTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTLFSKLQINQSII 373
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + + E +++ I G+ +H Q R V + F+ G LV TD+
Sbjct: 370 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 430 RGIDIQAV 437
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +KG L+ C+ LV+
Sbjct: 262 DLTKKGVCVLKDCSVLVM 279
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/110 (30%), Positives = 56/110 (50%)
Frame = +3
Query: 216 KGHNQLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 395
KG L + +DEAD++L F+P + +I + RQ LM+SAT+P VK + +
Sbjct: 266 KGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRF 325
Query: 396 LGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
L + IN+ +L+ I Q +E +K + LN KL ++++
Sbjct: 326 LTNPYVINLMD-ELTLK-GITQFYAFVEERQKIHCLNTLFSKLQINQSII 373
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + + E +++ I G+ +H Q R V + F+ G LV TD+
Sbjct: 370 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 430 RGIDIQAV 437
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = +2
Query: 545 AKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVA 724
+K IIF TK+ A + G A +HG+ TQ +R + L F++ L+ATDVA
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 725 ARGLDVDGIQ 754
ARGLD+ G+Q
Sbjct: 473 ARGLDIIGVQ 482
Score = 50.8 bits (116), Expect = 9e-07
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 28 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 207
L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 208 FLEKG-TTNLQRCTYLVL 258
L + +L L+L
Sbjct: 302 HLRNSMSVDLDDLAVLIL 319
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +3
Query: 246 IFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
+ LDEADR+L GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 316 VLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A++L PTRELA Q QV + + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 205 DFLEKGTTNLQRCTYLVL 258
D +KG L+ C LV+
Sbjct: 285 DLAKKGVCVLKDCAMLVM 302
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQ 434
+DEAD++L + F+P I ++I+ + RQ LM+SAT+P VK + YL IN+ Q
Sbjct: 302 MDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMD-Q 360
Query: 435 LSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLV 545
L+ + Q +E +K + LN KL ++++
Sbjct: 361 LTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSII 396
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
++IIF + + E +++ I G+ +H Q R V + F+ G LV TD+
Sbjct: 393 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFT 452
Query: 728 RGLDVDGI 751
RG+D+ +
Sbjct: 453 RGIDIQAV 460
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 196 RLIDFL-EKGTTNLQRCTYLV 255
RL+ L E L+ Y+V
Sbjct: 158 RLMHLLSEVDDMTLRTVEYVV 178
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
L V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 171 LRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGW-PAVCMHGDKTQQERAEVLYQFKEGRASILVATDVA 724
+T+IFV TK E ++ + P+VC +GD Q R + +F+ + +L+ TD+A
Sbjct: 273 QTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKIHVSRFRARKTMLLIVTDIA 331
Query: 725 ARGLDV 742
ARG+D+
Sbjct: 332 ARGIDI 337
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 383
+L V + LDEAD +LDMGF I +II + +RQT ++SAT P+EV+++
Sbjct: 206 RLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
+ALV+ PTRELA Q A H S + G EQ R +I++ATPG
Sbjct: 132 LALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPG 191
Query: 196 RLIDFLE 216
RL D +E
Sbjct: 192 RLKDHIE 198
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K I+F T + ++ + +H K Q R V +F++ + ILV +DV+A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 728 RGLD 739
RG+D
Sbjct: 374 RGVD 377
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
+ I LDEADR+LD F+ Q+ II Q+ RQTL++SAT K+VK LA L D I+
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYIS 278
Query: 420 IGSLQLSAN-HNILQIVDICQEHEKENKLNVYCK 518
+ + ++A +++Q V I +K + L + K
Sbjct: 279 VHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIK 312
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 545 AKTIIFVETKRKAEPISR--NIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATD 718
++ ++F+ TK++ + + N R G P +HG +Q++R V QF E R S+L TD
Sbjct: 317 SRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTD 375
Query: 719 VAARGLDVD 745
V ARGLD D
Sbjct: 376 VLARGLDFD 384
Score = 35.5 bits (78), Expect = 0.038
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
DG ++++PTRELA Q V G + GG + ++ + I++ P
Sbjct: 142 DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAP 201
Query: 193 GRLIDFLEKGTTNLQRCTYLVLMRL 267
GRL+ +++ T N + C L ++ L
Sbjct: 202 GRLLQHMDE-TPNFE-CPQLQILIL 224
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 7 RGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVI 183
R G ALV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+I
Sbjct: 101 RSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILI 160
Query: 184 ATPGRLIDFLE 216
ATPGRL+D L+
Sbjct: 161 ATPGRLLDHLK 171
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLD 739
+HG Q++R FK + ++L++TDVAARGLD
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLD 414
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +2
Query: 530 SQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILV 709
S+ P + ++IF T ++ +R G+ A+ + G TQ +R L +FK G +ILV
Sbjct: 256 SEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILV 315
Query: 710 ATDVAARGLDVDGI 751
TDVA+RGLD+ +
Sbjct: 316 CTDVASRGLDIPSV 329
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
L ++ LDEADR+L+ FE + +I+E+I +R+T ++SAT K+V+KL L + +
Sbjct: 162 LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPV 221
Query: 411 QINIGS 428
+I S
Sbjct: 222 KIEAAS 227
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 205 DFLE--KGTTNLQRCTYLVL 258
D + KG +L+ YLVL
Sbjct: 152 DHMSDTKG-FSLKSLKYLVL 170
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 383
+L V + LDEAD +LDMGF I +II + RQT ++SAT P+EV+++
Sbjct: 534 RLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
I LV+ PTRELA Q A H S + G EQ R +I++ATPG
Sbjct: 460 IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 519
Query: 196 RLIDFLE 216
RL D +E
Sbjct: 520 RLKDHIE 526
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K IIF T ++ + + +H K Q R V +F++ +A ILV +DV+A
Sbjct: 642 KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSA 701
Query: 728 RGLD 739
RG+D
Sbjct: 702 RGVD 705
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKT-IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFK 685
L+ + Q ++ G ++ +IFV T R + +S + + MH +Q R L +FK
Sbjct: 290 LVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFK 349
Query: 686 EGRASILVATDVAARGLDV 742
G+ IL+ATDVA+RGLD+
Sbjct: 350 SGKVPILLATDVASRGLDI 368
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/45 (46%), Positives = 32/45 (71%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
LDEADR+LD+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 209 LDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/67 (38%), Positives = 33/67 (49%)
Frame = +1
Query: 16 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 195
G ALV+ PTRELA Q+ + G +R + + GG Q L IVI TPG
Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 196 RLIDFLE 216
R+ LE
Sbjct: 186 RIKVLLE 192
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 19 PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 195
P +VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 196 RLIDFLEKGTTNLQ--RCTYL 252
R + +G L RC L
Sbjct: 512 RFTYLMNEGILGLSNLRCAIL 532
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 51.6 bits (118), Expect = 5e-07
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
+ I LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++
Sbjct: 168 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVI 227
Query: 420 IGSLQLSANHNILQIVDI-CQEHEKENKLNVYCKKLDKVKNLV 545
G+ S + L + C+ +K ++L V+ +K K LV
Sbjct: 228 SGAESKSKTSSGLYCEYLKCEADQKSSQL-VHLLIENKNKKLV 269
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPG 195
+ ++++PTREL+ QI +VA F T V + + GG L E G ++I TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 196 RLIDFLEK 219
RL D +++
Sbjct: 152 RLSDMMKR 159
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 635 HGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
HG Q+ R L F E + +L+ TDVAARGLD+ GI
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 338
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 51.2 bits (117), Expect = 7e-07
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 4 TRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVEI 177
T +G LV+ PTRELA Q VA + Y T V GG ++ +A L +GV +
Sbjct: 222 TPRNGTGVLVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVNL 279
Query: 178 VIATPGRLIDFLE 216
++ATPGRL+D LE
Sbjct: 280 LVATPGRLLDHLE 292
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 422
+DEADR+L+ FE ++KI+ + RQT ++SAT +V+ LA L + I++
Sbjct: 307 MDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
K ++F T + + + R + + + G Q +R QF + IL+ T+VAA
Sbjct: 402 KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAA 461
Query: 728 RGLD 739
RGLD
Sbjct: 462 RGLD 465
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 192
+G +V+ PTRELA Q + VA + + V GG +R +A+ + G +VIATP
Sbjct: 160 NGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATP 219
Query: 193 GRLIDFLE 216
GRL+D L+
Sbjct: 220 GRLLDHLQ 227
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 422
+DEADR+L+ FE + KI++ + RQT ++SAT +VK LA L + +++
Sbjct: 242 IDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
+HG Q R + + F + + IL+ TDVAARGLD+ +
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSV 403
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Frame = +2
Query: 509 LLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKE 688
L Q +S P +IFV++K +A+ + ++ A +H D ER + QF+
Sbjct: 371 LRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 428
Query: 689 GRASILVATDVAARGLDVDGI 751
G +L+ATDV ARG+D GI
Sbjct: 429 GEKWVLIATDVIARGMDFKGI 449
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 13 DGPIALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 186
DG A++L+P RELA Q + G ++R P + A + +++I+
Sbjct: 209 DGIRAVILSPARELAAQTAREGKKLIKGSNFHIR----LMTKPLVKTADFSKLWCDVLIS 264
Query: 187 TPGRLIDFLEKGTTNLQRCTYLVL 258
TP RL ++ +L + YLVL
Sbjct: 265 TPMRLKRAIKAKKIDLSKVEYLVL 288
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 383
+L V + LDEAD +LDMGF +I +II + RQT ++SAT EV+++
Sbjct: 232 RLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDV 721
G K IIF T ++ + + +H K Q R V +F++ ++ ILV +DV
Sbjct: 338 GYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDV 397
Query: 722 AARGLD 739
+ARG+D
Sbjct: 398 SARGVD 403
Score = 35.1 bits (77), Expect = 0.050
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 22 IALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPG 195
I LV+ PTRELA Q + + + V GG + R L++ +I++ATPG
Sbjct: 158 IVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPG 217
Query: 196 RLIDFLE 216
RL D ++
Sbjct: 218 RLKDHID 224
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 204
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 205 DFLEKGTTNL 234
+ + G +L
Sbjct: 342 ELMSAGEKHL 351
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +2
Query: 548 KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAA 727
+TI+F + IS ++ G + + Q+ R + + +F+ IL+ATD+ A
Sbjct: 504 RTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVA 563
Query: 728 RGLDVDGIQ 754
RG+D+ ++
Sbjct: 564 RGIDIKNVR 572
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 228 QLTAVHIFSLDEADRMLDMGFEPQIRKIIE 317
+L ++ F LDEADRM++ G +++ I++
Sbjct: 353 ELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/61 (37%), Positives = 42/61 (68%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
+ I LDEADR+L+MGF+ Q+ II ++ R+T ++SAT + V++LA+ L + +++
Sbjct: 168 LEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVE 227
Query: 420 I 422
+
Sbjct: 228 V 228
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 195
+ ++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 196 RLIDFLEK 219
RL D +E+
Sbjct: 152 RLSDIMER 159
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
+HGD Q R + L F + + L+ TDVAARGLD+ GI
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGI 347
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 389
+ I LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 161 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 635 HGDKTQQERAEVLYQFKEGRASILVATDVAARGLDVDGI 751
HG Q+ R L F E + +L+ TDVAARGLD+ GI
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGI 311
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 22 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 201
+ ++++PTREL+ QI +VA + + V E E G ++I TPGRL
Sbjct: 93 MGVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRL 146
Query: 202 IDFLEK 219
D +++
Sbjct: 147 SDMMKR 152
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 554 IIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAARG 733
I F+ R+ + + + G + MHGD + R+ VL +FK G +LV +++ARG
Sbjct: 411 IAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARG 470
Query: 734 LDV 742
LDV
Sbjct: 471 LDV 473
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 ALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 198
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 199 LIDFLEKGTTNLQRCTYLVL 258
+ + + G + C +LVL
Sbjct: 254 IAEISKGGKLHTHGCRFLVL 273
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Frame = +3
Query: 255 LDEADRMLDMGFEPQIRKIIEQI--------------RPDRQTLMWSATWPKEVKKLAED 392
LDE D +L F I +I+E + R +RQT++ SAT P V + A+
Sbjct: 273 LDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKS 332
Query: 393 Y 395
+
Sbjct: 333 W 333
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Frame = +2
Query: 347 VVSYLAQRSKETC*GLLGRLHSDQYRIITTF-RKSQHSSNCRYLSRT*KRK*IKCLLQEI 523
+ + L K+T G+L + D + F ++ +++ T + + L++ +
Sbjct: 358 IAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQ-VDALIEAV 416
Query: 524 GQSQEPGA-KTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRAS 700
+ +T++F T E ++ + + H + ERA +L F+E
Sbjct: 417 KNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGG 475
Query: 701 ILVATDVAARGLDVDGI 751
+ V TD AARG+DV +
Sbjct: 476 VFVCTDAAARGVDVPNV 492
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 542 GAKTIIFVETKRKAEPISRNIRRYGWPAVCMH---GDKTQQERAEVLYQFKEGRASILVA 712
G K IIF + + + + +G P + G Q R++ L F++G +LVA
Sbjct: 325 GEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVA 384
Query: 713 TDVAARGLDVDGI 751
+D RG+DV G+
Sbjct: 385 SDALTRGMDVKGV 397
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +1
Query: 148 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVL 258
+++LE V+I++ATPGRL+D + KG T L+ YLV+
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVV 196
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +3
Query: 231 LTAVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 410
++ V + +DE + G+ ++ I + I QT++++ ++ + + +LG +
Sbjct: 268 ISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSV 327
Query: 411 -QINIGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLD 527
++ + S I Q V +C EK KL + K LD
Sbjct: 328 NRVTVNESVASQGSCITQTVSVCASEEK--KLQKFAKHLD 365
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/82 (24%), Positives = 44/82 (53%)
Frame = +2
Query: 500 IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQ 679
I LL+E+ + G+K+I+F + + + + R + V + G +QQ+R +VL +
Sbjct: 865 ITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKE 924
Query: 680 FKEGRASILVATDVAARGLDVD 745
F E + +++ + A G+ ++
Sbjct: 925 FSEDGSILVLLMSLKAGGVGIN 946
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 237 AVHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 416
++ I LDEAD +L G+E +R + I Q L+ SAT +V+KL + L + I +
Sbjct: 200 SLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 259
Query: 417 NI 422
+
Sbjct: 260 TL 261
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
+ GD RA L + ++G +LV+TD+AARG+D+
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDL 407
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 25 ALVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 186
A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 187 TPGRLIDFLEKGTTNLQRCTYLVL 258
T L LEK + LV+
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVV 230
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
+ GD RA L + ++G +LV+TD+AARG+D+
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDL 250
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -3
Query: 350 PHQSLSVWAYLLNDFSDLWFKSHIQHTISLIKT-KYVHRCKLVVPFSKKSINLPGVA 183
P + +W +++ + + + +H HT+SLI +YV R +++P +++ I GVA
Sbjct: 157 PLPQIMIW-FVIPNAGEFRYAAHQNHTLSLIVLIQYVPRFLVMLPLNRRIIKATGVA 212
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/82 (25%), Positives = 43/82 (52%)
Frame = +2
Query: 500 IKCLLQEIGQSQEPGAKTIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQ 679
+KCL ++I +S G K+I+F + + + +RR G+ + G Q+ R +VL +
Sbjct: 1115 LKCL-EKIKKSGS-GEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKE 1172
Query: 680 FKEGRASILVATDVAARGLDVD 745
F E + ++ + A G+ ++
Sbjct: 1173 FNETKQKTILLMSLKAGGVGLN 1194
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 641 DKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
++T++++ E++ F+ G +I+VAT + GLDV
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDV 462
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 635 HGDKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
HG + ++ E + +F +G+ IL+ T++ GLD+
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDI 548
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 632 MHGDKTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
+HG ++ E L +F+ G IL++T V G+DV
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDV 838
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +2
Query: 551 TIIFVETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLYQFKEGRASILVATDVAAR 730
TII+V T++++ I++ + G A + ++ +V F + + ++VAT
Sbjct: 500 TIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGM 559
Query: 731 GLDVDGIQ 754
G+D ++
Sbjct: 560 GIDKKNVR 567
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 318 QIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKEN 497
+I + Q + + P++++K D GDYI +G ++ A IL ++D + E EN
Sbjct: 27 EIFDEDQAIYLMISLPEQIEKF--DGRGDYI---LGKTKILARFEILDVIDALKIEEDEN 81
Query: 498 K 500
K
Sbjct: 82 K 82
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 665 EVLYQFKEGRASILVATDVAARGLDV 742
+ + +F++G ++LVAT VA GLD+
Sbjct: 714 DTISKFRDGHVTLLVATSVAEEGLDI 739
>At5g19040.1 68418.m02264 adenylate isopentenyltransferase 5 /
cytokinin synthase (IPT5) identical to adenylate
isopentenyltransferase (IPT5) [Arabidopsis thaliana]
GI:14279056
Length = 330
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/104 (20%), Positives = 45/104 (43%)
Frame = +3
Query: 240 VHIFSLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 419
+H F + D+M+DMG ++R+I + D + A E+ + + +Y
Sbjct: 164 LHSFVSERVDKMVDMGLVDEVRRIFDPSSSDYSAGIRRAIGVPELDEFLRSEMRNY---- 219
Query: 420 IGSLQLSANHNILQIVDICQEHEKENKLNVYCKKLDKVKNLVRK 551
++++ E KEN + C++L K++ L ++
Sbjct: 220 -------PAETTERLLETAIEKIKENTCLLACRQLQKIQRLYKQ 256
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 353 SYLAQRSKETC*GLLGRLHSDQYRIITTFRKSQHSSNCRYLSRT 484
S L C L GRLHS +R+I T +K+++S+ + +T
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKT 273
>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
putative contains Pfam domains PF00560: Leucine Rich
Repeat and PF00069: Protein kinase domain
Length = 772
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 399 GDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVYCK 518
G ++++ + ++ + NI+Q+V C EH + ++ YC+
Sbjct: 516 GKFLEL-VNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCR 554
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 644 KTQQERAEVLYQFKEGRASILVATDVAARGLDV 742
++Q+ + VL +F+ G +++VAT + GLD+
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDI 543
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 270 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 404
++L MG+ + ++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At1g15580.1 68414.m01873 auxin-responsive protein / indoleacetic
acid-induced protein 5 (IAA5) / auxin-induced protein
(AUX2-27) identical to SP|P33078 Auxin-responsive
protein IAA5 (Indoleacetic acid-induced protein 5)
(Auxin-induced protein AUX2-27) {Arabidopsis thaliana}
Length = 163
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 563 VETKRKAEPISRNIRRYGWPAVCMHGDKTQQERAEVLY 676
VE K EP ++ + GWP VC + K ER + Y
Sbjct: 40 VEIDLKCEPAKKS-QVVGWPPVCSYRRKNSLERTKSSY 76
>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
kinase, putative similar to Z. mays leucine-rich repeat
transmembrane protein kinase LRRTPK 1, GenBank accession
number AF023164
Length = 776
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 366 KEVKKLAEDYLGDYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNVYC 515
K++ K A + D+ I + ++ + + NI+++V C EH++ + YC
Sbjct: 513 KKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYC 563
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.9 bits (59), Expect = 7.7
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +3
Query: 312 IEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQI-VDICQEHE 488
I ++P+R + A W ++ + E+YL + I S +++ N QI V+ +
Sbjct: 14 IHTVQPERDLV---ANWEVDLSEKLEEYL-----LKICSGEITGNEEDGQIPVNFAEAAL 65
Query: 489 K-ENKLNVYCKKLDKVKNLV-RKQ*FLLKPREKLSPYQGTSGD 611
+ + VY KK++ + NLV R FL K R++ +GTS +
Sbjct: 66 LLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQ-EQSKGTSNE 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,297
Number of Sequences: 28952
Number of extensions: 344751
Number of successful extensions: 1165
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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