Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0233.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont...    29   4.7  
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont...    29   4.7  
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r...    29   4.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   8.3  
At3g14040.1 68416.m01772 exopolygalacturonase / galacturan 1,4-a...    28   8.3  
At3g07850.1 68416.m00960 exopolygalacturonase / galacturan 1,4-a...    28   8.3  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   8.3  

>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 786 GPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPE-XHRGPY 652
           GPGP P P  Y   +F        GG   RF R P+  +   RGPY
Sbjct: 582 GPGPEPEPEGYVRRQFS------NGGYRGRFKRFPDGGDRKFRGPY 621


>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 786 GPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPE-XHRGPY 652
           GPGP P P  Y   +F        GG   RF R P+  +   RGPY
Sbjct: 582 GPGPEPEPEGYVRRQFS------NGGYRGRFKRFPDGGDRKFRGPY 621


>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein ;
           contains Pfam profile PF04564: U-box domain
          Length = 1033

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 368 NISKPSSNVTELKQVPSSSKHQIEQSVQGQYNES 469
           N+SK  S  TE+  +PS S +   Q   G  +ES
Sbjct: 199 NLSKSQSQSTEIPDIPSQSSNASSQRKYGNLSES 232


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -3

Query: 795 TPGGPGPSPNPVAYPGGKF-RFPTTVFPGGQISRFLRTP 682
           TPGG  PS      PGG     PTT  PGG       TP
Sbjct: 476 TPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTP 514



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
 Frame = -3

Query: 795 TPGGPGPSPNPVAYPGGKF-RFPTTVFPGGQISRFLRTPEKPEXHRGPYGXP 643
           TPGG  PS      PGG     PTT  PGG       +P  P     P   P
Sbjct: 489 TPGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTP 540


>At3g14040.1 68416.m01772 exopolygalacturonase / galacturan
           1,4-alpha-galacturonidase / pectinase identical to
           exopolygalacturonase [Arabidopsis thaliana] GI:311962;
           nearly identical to SP|P49063 Exopolygalacturonase clone
           GBGA483 precursor (EC 3.2.1.67) (ExoPG) (Galacturan
           1,4-alpha-galacturonidase) {Arabidopsis thaliana}
          Length = 445

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 757 GYRVRTWPGSPRG 795
           G R++TWPGSP G
Sbjct: 317 GVRIKTWPGSPPG 329


>At3g07850.1 68416.m00960 exopolygalacturonase / galacturan
           1,4-alpha-galacturonidase / pectinase identical to
           SP|P49063 Exopolygalacturonase clone GBGA483 precursor
           (EC 3.2.1.67) (ExoPG) (Galacturan
           1,4-alpha-galacturonidase) {Arabidopsis thaliana}
          Length = 444

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 757 GYRVRTWPGSPRG 795
           G R++TWPGSP G
Sbjct: 316 GVRIKTWPGSPPG 328


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -3

Query: 789 GGPGPSPNPVAYPGGKFRFPTTVFPGGQISRFLRTPEKPE 670
           GG  PSPNP      K   P  V P    S    TP+ PE
Sbjct: 390 GGSSPSPNPPRTSEPKPSKPEPVMPKPSDSSKPETPKTPE 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,244
Number of Sequences: 28952
Number of extensions: 461907
Number of successful extensions: 1099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)