Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0221.Seq
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58250.1 68418.m07293 expressed protein                             30   2.1  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   4.7  
At4g14840.1 68417.m02281 expressed protein                             28   6.3  
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    28   6.3  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    28   6.3  
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,...    28   8.3  
At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,...    28   8.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   8.3  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    28   8.3  

>At5g58250.1 68418.m07293 expressed protein
          Length = 211

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 443 WGATGSWKIEVPPTAPVAAALYQPPLATLEATEETYPLRLEEPVYGL 583
           W  TG+  + VPPTA  AA   +P L +    ++T  L L  P   L
Sbjct: 2   WSVTGALTVAVPPTA--AACRTKPFLISSSFPKQTKKLHLSSPSLSL 46


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 414 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 289
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 312 NIVVFGFVGIAALS--PLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAP 461
           +I V    G+ A+S  P+D   + F SYL  + NL Q   SE+ Q      P
Sbjct: 294 HIYVSSMNGVIAVSHPPVDINPEEFDSYLNSLENLLQQQPSEAGQESSSSLP 345


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 311 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 445
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 311 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 445
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
           EMBL:AF071172; isoform contains non-consensus GG
           acceptor splice site at intron 6
          Length = 788

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -3

Query: 556 EGVRFLRSLQGSQGGLVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWN 377
           E +  + S+Q + G L    C+R  RW   +      PA      V++++    PR+ W 
Sbjct: 431 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 489

Query: 376 SFTLASSG 353
           +    S G
Sbjct: 490 AAKPDSRG 497


>At5g13540.1 68418.m01563 expressed protein HERC2 - Homo sapiens,
           EMBL:AF071172; isoform contains non-consensus GG
           acceptor splice site at intron 6
          Length = 558

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -3

Query: 556 EGVRFLRSLQGSQGGLVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWN 377
           E +  + S+Q + G L    C+R  RW   +      PA      V++++    PR+ W 
Sbjct: 435 ESIAVVHSIQET-GYLELACCFRKGRWSTHYTDLEKIPALKVGQFVHFQKGITEPRWGWR 493

Query: 376 SFTLASSG 353
           +    S G
Sbjct: 494 AAKPDSRG 501


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 360 PAEIMPLSQRTQKPRYSPPLRIP 292
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 482 TAPVAAALYQPPLATLEATEETYPLRLEEP 571
           TAP       P   T  AT+ET P R EEP
Sbjct: 43  TAPTITKETAPTKETAPATKETAPTRTEEP 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,895
Number of Sequences: 28952
Number of extensions: 403531
Number of successful extensions: 1277
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)