Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0219.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    36   0.024
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    36   0.024
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    30   1.5  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    30   1.5  
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.6  
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    28   8.3  
At3g47620.1 68416.m05184 TCP family transcription factor, putati...    28   8.3  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +2

Query: 89  MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRS 259
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R  ++
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 347

Query: 260 TATSCG-SATDSTLSESTSPITL 325
            + S G S  ++  S  T  ++L
Sbjct: 348 GSFSRGPSEFEANGSHGTDTLSL 370


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +2

Query: 89  MSSSNKELE-EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRS 259
           M   N+  E EKL+  NS L+  Y  ++  S ++ENQ K  + QNV    ++DK R  ++
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQA 348

Query: 260 TATSCG-SATDSTLSESTSPITL 325
            + S G S  ++  S  T  ++L
Sbjct: 349 GSFSRGPSEFEANGSHGTDTLSL 371


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRSTATS--CGSATDS 292
           K+ + IL+G  D A     EY  Q K   IQN++NN ++      R             +
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMVRSYEKIREEEIKRMIEKLEKA 162

Query: 293 TLSESTSPITL 325
           + S S SP+ L
Sbjct: 163 SCSSSPSPVNL 173


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRSTATS--CGSATDS 292
           K+ + IL+G  D A     EY  Q K   IQN++NN ++      R             +
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMVRSYEKIREEEIKRMIEKLEKA 162

Query: 293 TLSESTSPITL 325
           + S S SP+ L
Sbjct: 163 SCSSSPSPVNL 173


>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 484

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 128 NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRNTRSTATSCGSATDSTLSES 307
           N + TG+ +  + +  E  N+GKG II+     ++I   +      T CG   +STL   
Sbjct: 326 NQVGTGENEDWLPKGFEERNKGKGLIIRGWAPQVLILDHKAIGGFVTHCG--WNSTLEGI 383

Query: 308 TSPITLDSSWP 340
            + + +  +WP
Sbjct: 384 AAGLPM-VTWP 393


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            related to TGF-beta resistance-associated  protein TRAG
            (GI:15624071) {Mus musculus};  similar to beta-transducin
            repeats containing protein - Homo sapiens,PID:e1284220;
            3' EST no_NP:TC8031
          Length = 1446

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 289  VRCRPTACSSTPGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFL-L 113
            + C  ++  +   VP+ + + +V  +L   A+A VL F ++ +S +  T  D+ V  + L
Sbjct: 1142 IECVSSSVGAYQVVPSSIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVSL 1201

Query: 112  EFFVRTAHAS 83
               +R   A+
Sbjct: 1202 RTLIRIIRAA 1211


>At3g47620.1 68416.m05184 TCP family transcription factor, putative
           auxin-induced basic helix-loop-helix transcription
           factor - Gossypium hirsutum, EMBL:AF165924
          Length = 489

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = -2

Query: 202 GALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHASRGHFSDAGADGEHARREHHE 23
           GA++  L F         +TG+  +           ++ + G  SD G D  + +R HH 
Sbjct: 391 GAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGDHHNTQRHHHH 450

Query: 22  KFHYH 8
           +  +H
Sbjct: 451 QQQHH 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,396
Number of Sequences: 28952
Number of extensions: 289998
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)