Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0201.Seq
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id...    29   2.7  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    29   3.6  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    29   3.6  

>At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1)
           identical to GI:2392895
          Length = 1196

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 572 VSVNVEAFTKATFNLTYEELLEYRNGVYNHAV 667
           +S+N+ AF K    LT+ +LL+  NG +N ++
Sbjct: 857 LSINLAAFEKPLRKLTFADLLQATNGFHNDSL 888


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 557 SXHFTVSVNVEAFTKATFNLTYEELLEYRNG 649
           S H  +S+NV  F K    LT+  LLE  NG
Sbjct: 827 SVHEPLSINVATFEKPLRKLTFAHLLEATNG 857


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 563 HFTVSVNVEAFTKATFNLTYEELLEYRNGVYNHAVNLQPGQLVXDFH 703
           H   S  V+ F  +     Y  ++ YR  V N  V +QP  +   FH
Sbjct: 587 HLRRSQFVQVFNNSPDETAYFRMILYRENVSNSVVMIQPSLISFSFH 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,686
Number of Sequences: 28952
Number of extensions: 296495
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)