Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0165
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 92 2e-19
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote... 90 9e-19
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote... 89 2e-18
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 28 3.0
At3g52720.2 68416.m05809 carbonic anhydrase family protein low s... 28 4.0
At3g52720.1 68416.m05808 carbonic anhydrase family protein low s... 28 4.0
At3g08650.2 68416.m01005 metal transporter family protein contai... 27 5.3
At2g11520.1 68415.m01242 protein kinase family protein contains ... 27 7.0
At1g73310.1 68414.m08484 serine carboxypeptidase S10 family prot... 27 7.0
At1g48800.1 68414.m05461 terpene synthase/cyclase family protein... 27 7.0
At5g65920.1 68418.m08297 U-box domain-containing protein low sim... 27 9.3
At5g11050.1 68418.m01291 myb family transcription factor contain... 27 9.3
At1g27870.1 68414.m03415 hypothetical protein 27 9.3
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 92.3 bits (219), Expect = 2e-19
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = +2
Query: 254 HCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQD 433
HCQ MD + PG+VPM ++ F E+E IQN+K+LQ F K+ + K + + KLVKGR D
Sbjct: 43 HCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLD 102
Query: 434 NFEFLQWFKKFFDANYGG 487
N EF+QW KK+ D+ GG
Sbjct: 103 NLEFMQWMKKYCDSVNGG 120
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGA 251
+ R ++LAW+N LQ N +K+EE C+GA
Sbjct: 14 VGRSEILAWINSTLQLNLSKVEEACSGA 41
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
similar to EBF3-S (Microtubule-associated protein) [Homo
sapiens] GI:12751131; contains Pfam profiles PF00307:
Calponin homology (CH) domain, PF03271: EB1 protein
Length = 293
Score = 89.8 bits (213), Expect = 9e-19
Identities = 38/77 (49%), Positives = 54/77 (70%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ +DM FPG VPM ++ F+ E+E IQN+K++Q F K+ + K + +++LVKGR DN
Sbjct: 44 CQMLDMTFPGVVPMHKVNFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDN 103
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K+F D+ GG
Sbjct: 104 LEFLQWLKRFCDSINGG 120
Score = 33.5 bits (73), Expect = 0.081
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGA 251
+ R+++L+W+ND L N ++IEE +GA
Sbjct: 14 VGRNEILSWINDRLHLNLSRIEEAASGA 41
>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profile PF03271: EB1 protein
Length = 276
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = +2
Query: 257 CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDN 436
CQ +DM FPG VPM ++ F E++ IQN+K+LQ F K+ + K + I++LVKGR DN
Sbjct: 44 CQMLDMTFPGVVPMHKVNFDAKNEYDMIQNYKVLQDVFNKLKITKPLEINRLVKGRPLDN 103
Query: 437 FEFLQWFKKFFDANYGG 487
EFLQW K+F D+ GG
Sbjct: 104 LEFLQWLKRFCDSINGG 120
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGA 251
+ R+++L W+ND L N +++EE +GA
Sbjct: 14 VGRNEILTWINDRLHLNLSRVEEAASGA 41
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 289 TAREQHVHELAMAAPVHNSSIFAKFDWRQSFTHASISCRD-RFSDVTFVEYTFTAIFTMY 113
TA+ QHVH+ A A + N ++ S + ++ D R V VEY FT + +
Sbjct: 104 TAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLA 163
Query: 112 QPLMKKFLT 86
+ K ++
Sbjct: 164 NESISKHIS 172
>At3g52720.2 68416.m05809 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 230
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 298 HWYTAREQHVHELAMAAPVH 239
HW+T E H+H + AA +H
Sbjct: 119 HWHTPSEHHLHGVQYAAELH 138
>At3g52720.1 68416.m05808 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 284
Score = 27.9 bits (59), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 298 HWYTAREQHVHELAMAAPVH 239
HW+T E H+H + AA +H
Sbjct: 119 HWHTPSEHHLHGVQYAAELH 138
>At3g08650.2 68416.m01005 metal transporter family protein contains
ZIP Zinc transporter domain, Pfam:PF02535
Length = 619
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -2
Query: 393 ILSTPIF--LKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWRHLYTTLRSSQ 220
IL IF L+ C +K SC VL L LF+ GN+ N QW + S
Sbjct: 7 ILRALIFTVLEKTCLEIKMMHSSCKGLVLLLFLFVVVFIGNT-DANAQWEVSHKVRASPH 65
Query: 219 SLTGDN 202
G N
Sbjct: 66 ENMGRN 71
>At2g11520.1 68415.m01242 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 510
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 474 ASKNFLNH--CKNSKLSWKRPFTSLSMGTILSTPIFLKPACNILKF 343
AS +F++ CK+ L++ +P+ S+ TI P+ C L+F
Sbjct: 30 ASTSFVSSSVCKSDHLTYTKPYQQGSLFTINGNPVEKLRFCEALRF 75
>At1g73310.1 68414.m08484 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P07519) [Hordeum vulgare]; glucose acyltransferase
GB:AAD01263 [Solanum berthaultii]; contains Pfam
profile: PF00450 Serine carboxypeptidase
Length = 441
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 366 PACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWRHLYTTLRSSQSL-TGDNHSPT 190
P C+ + +Y + L ++ GTLP + +S + W + + Q + TG ++S T
Sbjct: 86 PGCSAISGLLYQNGPLAMKLDVYNGTLP-SLVSTTYSWTKTSSMIFLDQPVGTGFSYSRT 144
Query: 189 LAYHAAID 166
++ D
Sbjct: 145 QLFNKPSD 152
>At1g48800.1 68414.m05461 terpene synthase/cyclase family protein
similar to terpene cyclase GI:9293912 from [Arabidopsis
thaliana]
Length = 603
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 355 YFKVLYIFM-FQICLKFDSFHWYTAREQHVHELAMAAPVHNSSIFAKFDWRQSFTHASIS 179
YF V I + + K +++ W R++ V ++ A + N K D R+ + SI+
Sbjct: 463 YFTVAGILLGMENINKKEAYEWLIFRDKLVRAMSTKARLVNDLFGYKDDMRRGYVTNSIN 522
Query: 178 CRDRFSDVT 152
C + VT
Sbjct: 523 CYKKQYGVT 531
>At5g65920.1 68418.m08297 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 444
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 225 KIEELCTGAAIASSWTCCSLA 287
K+ E CT AI+ W+ C LA
Sbjct: 364 KVSEKCTNYAISILWSVCKLA 384
>At5g11050.1 68418.m01291 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA binding domain;
identical to cDNA putative transcription factor MYB64
(MYB64) GI:15375309
Length = 423
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 492 AAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTILST 382
AAPP A + FLN KN L +K+ S+ + +T
Sbjct: 15 AAPPLTAVERFLNGQKNEALCFKKQERSIDRPIVKTT 51
>At1g27870.1 68414.m03415 hypothetical protein
Length = 213
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 313 KFDSFHWYTAREQH--VHELAMAAPVHNSSIFAKFDWRQSFTHASISC 176
KF+S H+ R H ++ AP+ N S+F W + ++ C
Sbjct: 160 KFESIHFNWIRRHHNTPADILAKAPLQNQSLFLNHFWVPNVITYALHC 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,179
Number of Sequences: 28952
Number of extensions: 244530
Number of successful extensions: 624
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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