Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0163
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ... 60 1e-09
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ... 53 1e-07
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 35 0.041
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 35 0.041
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 29 2.7
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 27 6.2
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 27 8.3
At3g52480.1 68416.m05771 expressed protein 27 8.3
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 27 8.3
At1g22540.1 68414.m02815 proton-dependent oligopeptide transport... 27 8.3
>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
SP:P34893 from [Arabidopsis thaliana]
Length = 98
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/50 (58%), Positives = 34/50 (68%)
Frame = +2
Query: 245 SPKKNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 394
S K+G IPV V GD VLLPEYGGT+V L E EYHLFR+ D+L +
Sbjct: 48 SRDKDGKLIPVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPGARKK 257
I++PEK+ SK+ G+V+AVGPG+R K
Sbjct: 27 ILLPEKS-SKLNSGKVIAVGPGSRDK 51
>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
Length = 97
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +2
Query: 260 GDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 394
G+ IPV V GD VLLPE+GGT+V L EKE+ L+R+ DI+A +
Sbjct: 53 GNLIPVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95
Score = 30.7 bits (66), Expect = 0.67
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPGARKK 257
I++PEK+ S++ G V+AVGPGAR +
Sbjct: 27 ILLPEKS-SQLNSGRVIAVGPGARDR 51
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 109 KRLVPLLDRVLIKRAEAITKTAGGL 183
KRL+P L+RVL+++ +KT G+
Sbjct: 3 KRLIPTLNRVLVEKILPPSKTVSGI 27
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 106 VKRLVPLLDRVLIKRAEAITKTAGGL 183
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPG 245
I++P AQSK GEVVAVG G
Sbjct: 84 ILLPSTAQSKPQGGEVVAVGEG 105
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 121 PLLDRVLIKRAEAITKTAGGL 183
PL DRVL+K EA KT GG+
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGI 84
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +1
Query: 106 VKRLVPLLDRVLIKRAEAITKTAGGL 183
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPG 245
I++P AQSK GEVVAVG G
Sbjct: 84 ILLPSTAQSKPQGGEVVAVGEG 105
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 121 PLLDRVLIKRAEAITKTAGGL 183
PL DRVL+K EA KT GG+
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGI 84
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 82 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGLSSQRRL 201
L++ ++ ++ VP+ DRVL+ +ITK G+++ +R+
Sbjct: 900 LQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRI 939
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 82 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGLSSQRRL 201
L++ + ++ VP+ DRV + A ITK G+++ +R+
Sbjct: 362 LQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRI 401
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 328 FSTAVFWKKNFITHTNLNGDEVSIFFRAPGPTATTSP 218
F V K+N T N+N E S + A T T P
Sbjct: 470 FQEKVTQKRNLSTRNNINSSEKSSSYEAVSDTVVTKP 506
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 115 LVPLLDRVLIKRAEAITKTAGGLSSQRRL 201
L+P D++LI A+ +TK G+S + R+
Sbjct: 364 LMPFYDKILIPIAKKLTKNEKGISVKERM 392
>At3g52480.1 68416.m05771 expressed protein
Length = 209
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 355 FFLIIFKAYFSTAVFWKKNFITHTNLNGDEVSIFFRAPGP-TATTSPCKTL 206
F L+ A F+ ++WK+ F ++ G E F G TAT P K L
Sbjct: 16 FCLVAVTAQFAYVLWWKRRF-RRRSIAGSERDAFSSRGGDLTATPPPSKEL 65
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 185 HPREGSIQGFTRRSSSGRSWSPKKNGDFIPVQVSVGDKVLLPEYG 319
H E ++ F+ S +S K GDF+ ++ G K LLP+ G
Sbjct: 245 HSAEVTVLNFS--SDGALLYSGVKAGDFVVWELGTGKKQLLPKIG 287
>At1g22540.1 68414.m02815 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 557
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 118 VPLLDRVLIKRAEAITKTAGGLSSQRRL 201
+P+ DRVLI A + T GG++ +R+
Sbjct: 374 IPIYDRVLIPIARSFTHKPGGITMLQRI 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,906
Number of Sequences: 28952
Number of extensions: 196532
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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