Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0127
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 95 2e-20
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 95 2e-20
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.27
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 30 0.63
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.1
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.5
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 28 2.5
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 28 2.5
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At1g76010.1 68414.m08825 expressed protein 27 4.4
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 5.9
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 27 5.9
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 5.9
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 27 5.9
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 5.9
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 27 7.7
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 27 7.7
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 27 7.7
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 27 7.7
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 27 7.7
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 7.7
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +3
Query: 255 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWR 395
SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRM APTK WR
Sbjct: 69 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWR 115
Score = 69.7 bits (163), Expect = 8e-13
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 243
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 244 GHQT 255
GHQT
Sbjct: 65 GHQT 68
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +3
Query: 255 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWR 395
SAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRM APTK WR
Sbjct: 68 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWR 114
Score = 71.7 bits (168), Expect = 2e-13
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 234
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 235 KEAGHQT 255
K+AGHQT
Sbjct: 61 KKAGHQT 67
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.5 bits (68), Expect = 0.27
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 393 ARASWGRTYVHHDTCYRRHPDRTYGYHHHGHAEF 292
A A+ HH Y H YGY +HGH +F
Sbjct: 112 AAAAGAHHMSHHHGHYGHHHGHGYGYGYHGHGKF 145
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 388 GFVGAXIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALFGDQP 239
GFV + P H +P L PPP++ + + P P S+ F +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 85 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 231
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -3
Query: 423 SEXDATVPAPARASWGRTYVHHDTCYRRHPDRTYGYHHHGH 301
S+ P+P+ + + + HH + H + +HHH H
Sbjct: 314 SDSSTKSPSPSPSPHSKHHHHHHHHHHHHHHHHHNHHHHHH 354
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 136 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 231
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 136 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 231
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 300 RVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWRALAPSRQXPTS 428
R RGG H+ G+G +G GG P P R P TS
Sbjct: 83 RGRGGPPHQGGRGGYGGGRGGGPSSGP--PQRQSVPELHQATS 123
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 234 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 368
+G S + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 300 RVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWRALAPSRQXPTS 428
R RGG H+ G+G +G GG P P R P TS
Sbjct: 83 RGRGGPPHQGGRGGYGGGRGGGPSSGP--PQRQSVPELHQATS 123
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 234 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 368
+G S + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 345 RRHPDRTYGYHHHGHAEFGQQHVRYPMIRHCLV 247
R P +G+H ++ QQH+ P RHCLV
Sbjct: 150 RMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLV 182
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 234 QGGWSPNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 362
QG + + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 60 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 197
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 324 RSGQGAFGNMCRGGRMXAPTK 386
R G+G FG++ RGG M A K
Sbjct: 79 RGGKGGFGSLLRGGGMKAGQK 99
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 270 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 365
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 350 HVSWWTYVRPHEALAGAGTVASXSDIXE 433
HVS W+ V H +LAG+G+ S + E
Sbjct: 204 HVSAWSAVLAHMSLAGSGSYLSAELVLE 231
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 124 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 26
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 249 PNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 365
P S+ G R+P+ GGG G+G G RGG
Sbjct: 420 PKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGG-ARGG 457
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 249 PNSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 365
P S+ G R+P+ GGG G+G G RGG
Sbjct: 419 PKSSNPRNGGEGYQRVPQNGGGGRGGRGEGGRGG-ARGG 456
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 346 PKAP*PDLWVPPPRTRGIRATARPVPHDS 260
P A P++ PPP R IRA A +PH+S
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNS 73
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 384 SWGRTYVHHDTCYRRHPDRTY-GYHHHGHAEFGQQHVRY 271
S GR H D RH D Y G+ E+G+ + RY
Sbjct: 441 SKGRYPNHGDNYSSRHQDNNYGGFQRQRREEYGKAYNRY 479
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -2
Query: 388 GFVGAXIRPPR-HMLPKAP*PDLWVPPPRTRGIRATARPVPHDSAL--FGD 245
G++ A PP+ LP P W PPP++ + P+P S FGD
Sbjct: 370 GYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 139 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 26
G W+H SH+ ++ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,692,467
Number of Sequences: 28952
Number of extensions: 220018
Number of successful extensions: 797
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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