Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0126
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 103 7e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 103 7e-23
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 103 9e-23
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 28 4.3
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 5.7
At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR ... 28 5.7
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 9.9
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 9.9
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 103 bits (248), Expect = 7e-23
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
E++++GN +E VS S ALI Q
Sbjct: 146 EIVLDGNDIELVSRSCALINQ 166
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFG++K A++RT SHV+N+I
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +2
Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
+VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 103 bits (248), Expect = 7e-23
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
E++++GN +E VS S ALI Q
Sbjct: 146 EIVLDGNDIELVSRSCALINQ 166
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFG++K A++RT SHV+N+I
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +2
Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
+VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 103 bits (247), Expect = 9e-23
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M GV +V S K KD
Sbjct: 86 GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145
Query: 438 ELIIEGNSLEDVSSSAALIQQ 500
E+I+EGN +E VS S ALI Q
Sbjct: 146 EIILEGNDIELVSRSCALINQ 166
Score = 83.8 bits (198), Expect = 8e-17
Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFGS+K A++RT SHV+N+I
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLI 84
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +2
Query: 506 YVKNKDIRKFLDGLYVSEKTTVVLDD 583
+VK KDIRKFLDG+YVSEK + +++
Sbjct: 169 HVKKKDIRKFLDGIYVSEKGKIAVEE 194
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 40 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 183
+++K+ DG VHV ++ + ++ +LK+N + +++ + P L V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -3
Query: 454 PSMISS-SFCFGELTTVTPGAI 392
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 967
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 574 HNSCFLRYIKTIQELSDILILDVVDCWMRAAELETSSKELPSMISSSFCFGE 419
HN F + I L + LD+ W R +L KEL +I + CF E
Sbjct: 570 HNPDFNELPEQISGLVSLQYLDL--SWTRIEQLPVGLKELKKLIFLNLCFTE 619
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 219 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 124
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 43 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,590
Number of Sequences: 28952
Number of extensions: 274846
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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