Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0113
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 109 9e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 109 9e-25
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 32 0.22
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 31 0.38
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.67
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.5
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.6
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami... 27 6.2
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 8.3
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 8.3
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 109 bits (263), Expect = 9e-25
Identities = 47/54 (87%), Positives = 49/54 (90%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAPTKPWRRWHRRV 417
TSAESWGTGRAV+RIPRV G GTHR+G AFGNMCRGGRMFAPTK WRRWHRRV
Sbjct: 68 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121
Score = 67.7 bits (158), Expect = 5e-12
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 74 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 247
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 248 GHQ 256
GHQ
Sbjct: 65 GHQ 67
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 109 bits (263), Expect = 9e-25
Identities = 47/54 (87%), Positives = 49/54 (90%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAPTKPWRRWHRRV 417
TSAESWGTGRAV+RIPRV G GTHR+G AFGNMCRGGRMFAPTK WRRWHRRV
Sbjct: 67 TSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 238
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 239 KEAGHQ 256
K+AGHQ
Sbjct: 61 KKAGHQ 66
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = -1
Query: 467 SSSNGCCQRXXSAVGGLTRRCQRRQGFVGANIRPPRHMLPKAP*PDLWVPXPRTRGIRAT 288
SSS+ G + R CQ+ GFV + P H +P L P P++ +
Sbjct: 149 SSSSAAAAVGNGNGGQILRVCQQSLGFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLP 208
Query: 287 ARPVPHDSALVGDQP 243
+ P P S+ +P
Sbjct: 209 SPPQPPPSSSFHAEP 223
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 31.5 bits (68), Expect = 0.38
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 214 LEAALLREQGGWSPTSAESWGTGRAVARIPRVRGXGTHRSGX---GAFGNMCRGGRMFAP 384
+ AL+R + G PT AE + + + ++P G G G G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 385 TKPW 396
W
Sbjct: 135 ISKW 138
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 397 ARASWGRTYVHHDTCYRRHXDRTYGYHXHGHAEF 296
A A+ HH Y H YGY HGH +F
Sbjct: 112 AAAAGAHHMSHHHGHYGHHHGHGYGYGYHGHGKF 145
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 89 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 140 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 235
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 1183
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 532 ESFGNLFQKCVL-LSLETSAGTPVAATVAAKGXSPLSEV*RDGASAARASWGRTYVHHDT 356
ES+ K V+ + A TP +V+A + + EV D A AARA R +++H
Sbjct: 25 ESYATFTLKRVVPATTSDKAKTPAIESVSATEQAKM-EVESDEAKAARALRRRPWINHSG 83
Query: 355 C 353
C
Sbjct: 84 C 84
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 64 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 201
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 128 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 30
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,829
Number of Sequences: 28952
Number of extensions: 249182
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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