Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0110
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    70   2e-12
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    41   7e-04
At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase...    28   6.8  
At4g04920.1 68417.m00715 expressed protein                             28   6.8  
At2g20900.3 68415.m02465 diacylglycerol kinase, putative contain...    28   6.8  
At2g20900.2 68415.m02464 diacylglycerol kinase, putative contain...    28   6.8  
At2g20900.1 68415.m02463 diacylglycerol kinase, putative contain...    28   6.8  
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)...    27   9.0  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A+  +++SG+LGL     + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LEAGGASLESVVKTTVLLG*HGRLPNFQQVYAGYF 526
           L+A GA   SVVKTT++L          ++YA YF
Sbjct: 124 LKASGADYSSVVKTTIMLADLADFKTVNEIYAKYF 158


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASLES 451
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N   + E+   S+ S
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISS 482


>At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase
           family protein contains Pfam doamin PF05770 Inositol 1,
           3, 4-trisphosphate 5/6-kinase; contains weak similarity
           to inositol phosphate kinase (GI:27549256) [Zea mays]
          Length = 391

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 401 LDNLRHVLEAGGASLESVVKTTVLLG*HGRLPNFQQVYAGYFLXLA 538
           L N+  + E G  ++  V+      G +G+LP+++QV+  +F  LA
Sbjct: 336 LFNIDMIREHGSKNVFYVIDINYFPG-YGKLPDYEQVFVDFFQNLA 380


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYIS 331
           SN+NN+TSP       P +  +  DK+LY++
Sbjct: 844 SNRNNVTSP-TQNASSPATPQVFPDKSLYLA 873


>At2g20900.3 68415.m02465 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 491

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 484 MLAQQNSSFHDRLQRSATSFKYMSQIVQSLTGLRFSTTADHLCISIQSENSRNV*GLVR* 305
           M AQ + +FH   +R     K+ +Q+V   T ++   T    C S+    SRN+  L + 
Sbjct: 240 MDAQISYAFHS--ERKLHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLAKV 297

Query: 304 NCLTVRTYW 278
              T    W
Sbjct: 298 KIATRNGQW 306


>At2g20900.2 68415.m02464 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 491

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 484 MLAQQNSSFHDRLQRSATSFKYMSQIVQSLTGLRFSTTADHLCISIQSENSRNV*GLVR* 305
           M AQ + +FH   +R     K+ +Q+V   T ++   T    C S+    SRN+  L + 
Sbjct: 240 MDAQISYAFHS--ERKLHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLAKV 297

Query: 304 NCLTVRTYW 278
              T    W
Sbjct: 298 KIATRNGQW 306


>At2g20900.1 68415.m02463 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 509

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -2

Query: 484 MLAQQNSSFHDRLQRSATSFKYMSQIVQSLTGLRFSTTADHLCISIQSENSRNV*GLVR* 305
           M AQ + +FH   +R     K+ +Q+V   T ++   T    C S+    SRN+  L + 
Sbjct: 240 MDAQISYAFHS--ERKLHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLAKV 297

Query: 304 NCLTVRTYW 278
              T    W
Sbjct: 298 KIATRNGQW 306


>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
           identical to telomerase reverse transcriptase
           [Arabidopsis thaliana] GI:5880683
          Length = 1123

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 488 VHASPTKQ*FSRPTPTKRHQLQVHVADCPEPDGSAL 381
           VH +  K+  +   PTKR  L   V DCP+ D + +
Sbjct: 189 VHENKRKRDDNVQPPTKRQWLSSAVDDCPKDDSATI 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,544
Number of Sequences: 28952
Number of extensions: 301543
Number of successful extensions: 711
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)