Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0100
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    29   3.5  
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    28   6.1  
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   6.1  
At1g78740.1 68414.m09177 hypothetical protein                          27   8.1  

>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 269 VTPYGVHDADGVHGGCAIGDIIAAFNNTCSCYVSVS 162
           + P G  DA GV G C     +A  N  C   + V+
Sbjct: 141 IVPQGGGDAGGVAGNCTTTGCVAELNGPCPAQLKVA 176


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 54  KKNDRGKETIVTIHDLP*NLYLWCKILKSAEYLG 155
           K  D G   I     LP N+  W KILKS EY G
Sbjct: 64  KTGDSGNREITKTGSLPVNIPDWSKILKS-EYRG 96


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 331 FDLVGVLYP*CQQGQKPNVLVAGNRKAHRIRGAWRP 438
           F L  V Y      +KPN +V G   A  I G W P
Sbjct: 41  FILTFVAYIAFHAARKPNSIVKGTLSASTIEGGWAP 76


>At1g78740.1 68414.m09177 hypothetical protein
          Length = 306

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 204 NNVANCASTMYAVCIMYP-IRCHPTPPSCQNPEKCLKKTTSKGVRPCR 344
           ++V N   +   + I+Y  +RC P PP       C+  +T+ G++ C+
Sbjct: 251 SSVKNMTISSIILKIIYDYLRCEPLPPHSVIYISCMLSSTTTGLKCCQ 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,969
Number of Sequences: 28952
Number of extensions: 248485
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)