Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0099
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 182 3e-46
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 182 3e-46
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 182 3e-46
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 182 3e-46
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 181 5e-46
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 180 6e-46
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 179 1e-45
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 178 3e-45
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 176 1e-44
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 91 9e-19
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 90 1e-18
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 90 1e-18
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 83 1e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 83 1e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.3
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 29 3.1
At3g21720.1 68416.m02740 isocitrate lyase, putative similar to i... 29 4.1
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 28 7.2
At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 182 bits (442), Expect = 3e-46
Identities = 82/113 (72%), Positives = 95/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Score = 150 bits (364), Expect = 8e-37
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+D+KNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 182 bits (442), Expect = 3e-46
Identities = 82/113 (72%), Positives = 95/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Score = 150 bits (364), Expect = 8e-37
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+D+KNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 182 bits (442), Expect = 3e-46
Identities = 82/113 (72%), Positives = 95/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Score = 153 bits (370), Expect = 1e-37
Identities = 68/88 (77%), Positives = 78/88 (88%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+DAKNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 182 bits (442), Expect = 3e-46
Identities = 82/113 (72%), Positives = 95/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Score = 150 bits (364), Expect = 8e-37
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR LTVPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+DAKNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDAKNMMCAADPRHGRYLTASAMFRGK 320
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 181 bits (440), Expect = 5e-46
Identities = 80/113 (70%), Positives = 96/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDIPP G+KMASTF+GN+T IQ +
Sbjct: 319 RGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEM 378
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 379 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 431
Score = 144 bits (349), Expect = 5e-35
Identities = 65/88 (73%), Positives = 76/88 (86%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT Q
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+DAKNMM A DPRHGRYLT + + G+
Sbjct: 294 MWDAKNMMCAADPRHGRYLTASAMFRGK 321
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 180 bits (439), Expect = 6e-46
Identities = 80/113 (70%), Positives = 97/113 (85%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDIPP+GLKMA+TF+GN+T IQ +
Sbjct: 319 RGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEM 378
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL++EYQQYQDATA
Sbjct: 379 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 431
Score = 144 bits (350), Expect = 4e-35
Identities = 65/88 (73%), Positives = 76/88 (86%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT Q
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+D+KNMM A DPRHGRYLT + I G+
Sbjct: 294 MWDSKNMMCAADPRHGRYLTASAIFRGQ 321
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 179 bits (436), Expect = 1e-45
Identities = 81/113 (71%), Positives = 95/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI PRGL MASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
Score = 151 bits (367), Expect = 3e-37
Identities = 67/88 (76%), Positives = 78/88 (88%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+D+KNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDSKNMMCAADPRHGRYLTASAMFRGK 320
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 178 bits (433), Expect = 3e-45
Identities = 80/113 (70%), Positives = 96/113 (84%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG++S KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDI P+GLKMASTFIGN+T IQ +
Sbjct: 318 RGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDATA 594
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL++EYQQYQDATA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
Score = 150 bits (363), Expect = 1e-36
Identities = 68/106 (64%), Positives = 83/106 (78%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTA 319
M+DAKNMM A DPRHGRYLT + + G+ K++ + K +
Sbjct: 293 MWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNS 338
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 176 bits (428), Expect = 1e-44
Identities = 79/112 (70%), Positives = 94/112 (83%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI P GLKMASTFIGN+T IQ +
Sbjct: 318 RGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEM 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDAT 591
F+RVSEQF AM + ++FLHWYTGE + +AESNMNDL++EYQQYQDAT
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429
Score = 149 bits (362), Expect = 1e-36
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT Q
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGE 265
M+DAKNMM A DPRHGRYLT + + G+
Sbjct: 293 MWDAKNMMCAADPRHGRYLTASAVFRGK 320
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 90.6 bits (215), Expect = 9e-19
Identities = 36/96 (37%), Positives = 58/96 (60%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + +VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTS 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTS 289
+F+ NMM CDPRHG+Y+ + G+ + K + +
Sbjct: 295 VFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNT 330
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ +A I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N+T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 378
C RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N+T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 313
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Frame = +1
Query: 244 CDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMAS 399
C RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 400 TFIGNTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
I N+T + +F R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 178
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 179 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 265
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 178
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 179 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 265
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +1
Query: 121 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIRGRMSMKEVDEQLAN 300
A+V R +TV N+ + +S + + I+G + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 301 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTXIQTIFKRVSEQFVAMX 471
I+ + F+EW P + ++A+ P +++ + + T I+ +F + Q+ +
Sbjct: 342 IRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLR 401
Query: 472 KAESFLHWY 498
K ++FL Y
Sbjct: 402 KKQAFLDNY 410
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 109 RGVEMQARKRHHVHSQLPQISVQLSRKP 26
RGV + + K HH+H Q+P I + KP
Sbjct: 39 RGVVVSSLKTHHLHHQIPVIDLSKLSKP 66
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 208 RV*SSTREVFDRCDDIRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAV 363
R+ + RE R D++R ++ K D L ++ KN +E++PN C + +
Sbjct: 200 RIQGTLREWVMR-DEVRRFIAKKFKDFLLTYVKPKNENGDIEYVPNKCSLEI 250
>At3g21720.1 68416.m02740 isocitrate lyase, putative similar to
isocitrate lyase GI:167144 from [Brassica napus]
Length = 576
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 268 TFAP*YRRNGQIPPVSRITRDHHVFGVEHLQRQ 170
TFA Y R G + V RI R+ GV+ L Q
Sbjct: 485 TFAKDYARRGMLAYVERIQREERTHGVDTLAHQ 517
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 562 ILNHSCWTLPSVNSISSIPHQCTSARSFPP 473
+++ C++LP V IS PH+ + SF P
Sbjct: 431 VIHQKCFSLPRVIRISRHPHRISFTPSFDP 460
>At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 395
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 281 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRXYRPY 436
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 281 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 327
>At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 490
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 281 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRXYRPY 436
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 376 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,277
Number of Sequences: 28952
Number of extensions: 310983
Number of successful extensions: 880
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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