Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0070
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    30   1.3  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   5.4  

>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
 Frame = +1

Query: 76  YGALVC---GTDYCEKNPCIQ--PPLVCPKNTEHRXRHAGKXA--CCPACVTXLGEGATC 234
           YG  VC   G D      C++  P +  P + +H  +   K    CC  C++ L  G  C
Sbjct: 34  YGGYVCNEVGCDTLFHKECVESVPEIKHPSHPQHPLKLNLKCGRFCCSLCISGLQVGYHC 93

Query: 235 KI--YSKEL--AKPPPLCVRSLSNAS 300
            I  ++  L  A+ PP    S S++S
Sbjct: 94  SICDFNVHLVCARRPPSSTSSSSSSS 119


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 150 LRANKWWLYAWIFFTVVC 97
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,187
Number of Sequences: 28952
Number of extensions: 237269
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)