Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0055
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 32 0.18
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 29 1.3
At2g32140.1 68415.m03928 disease resistance protein (TIR class),... 29 1.7
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 28 2.9
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 2.9
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 3.8
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 28 3.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 5.1
At1g31370.1 68414.m03839 expressed protein ; expression supporte... 27 5.1
At3g10710.1 68416.m01289 pectinesterase family protein contains ... 27 6.7
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual... 27 6.7
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof... 27 8.9
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = -3
Query: 351 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRG 172
A R+G S S + G +L S A AV +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 171 TEYSTTCRTARRAYSKARMACDTGG 97
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 294 GASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
G +G ++V S+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 371
Score = 29.1 bits (62), Expect = 1.7
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Frame = -3
Query: 453 NTVRTASYNIKRPVADI-SQHPNHDSEQPP--EXLKTAVPRRGAKLNARSTSILVRGASL 283
+T+R S N V SQ PN D E LK V AKL A +TSI+ A L
Sbjct: 242 STMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAEL 297
Query: 282 GNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDT 103
S A ++ + L +SNG S S+ RR+ + ++ +
Sbjct: 298 QRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEV 357
Query: 102 GGKAS 88
G +S
Sbjct: 358 LGISS 362
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 333 AKLNARSTSILVRGAS-LGNGDSVTSNAIAVLIWVWRLTD 217
A + A S+ G + L N +TSNA+A++ W+ ++ D
Sbjct: 177 ALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIAD 216
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 28 SIPKFHSSLQDLKQPSLQEPRCLATRV 108
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 438 ASYNIKRPVADISQHPNHDSEQPPEXLKTAVPRRGAKLNARSTSILV 298
++Y+I+ I + Q LK PRRG KLNA++ I +
Sbjct: 330 STYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 RARVELRSASWHRGLQXLWRLFAVVVRMLGNV 408
RAR+ L A G + +W A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776
>At1g31370.1 68414.m03839 expressed protein ; expression supported
by MPSS
Length = 193
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 455 KTPFEQRVTILSGQSPTFPNIRTTTANSLQXS*RPRCH 342
K+ FE+ I S P P++RTT+ NSL CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163
>At3g10710.1 68416.m01289 pectinesterase family protein contains
similarity to pectinesterase GB:AAB57671 [Citrus
sinensis]; contains Pfam profile: PF01095 pectinesterase
Length = 561
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
L N +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220
>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
specificity kinase 1 (ADK1) [Arabidopsis thaliana]
gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
and gi:1216483. Note: differences between cDNAs in the
11th exon, possibly due to errors or alternative
splicing.
Length = 471
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 478 RIFNTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRXLED 353
RI E ++R + ++ A SRRH TS R R+ASR D
Sbjct: 329 RIAGKETRENRFSGAVE--AFSRRHPATSTTRDRSASRNSVD 368
>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 493
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 10 KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 126
K S S I FH Q+ ++P ++ PR L + + A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,499,774
Number of Sequences: 28952
Number of extensions: 156847
Number of successful extensions: 513
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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