Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0049
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19400.1 68418.m02312 expressed protein                             27   5.4  
At5g66300.1 68418.m08359 no apical meristem (NAM) family protein...    27   7.1  
At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ...    27   7.1  

>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 140 NPPNQSYWFVLREDXSNVILSTNNFVNQ-NPQIPL 241
           NPP+ +   +LRE    +IL ++ F  Q N +IPL
Sbjct: 37  NPPDPNLLQLLREKYEAIILESHTFSEQHNIEIPL 71


>At5g66300.1 68418.m08359 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 292

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 104 LFRYFSLKMDMNNPPNQSYWFVLR 175
           +  Y+SL+   N+PP +  W V R
Sbjct: 135 IHEYYSLESHQNSPPQEEGWVVCR 158


>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
           similar to single-strand DNA endonuclease-1 [Oryza
           sativa (japonica cultivar-group)]
           gi|16923283|dbj|BAB72003
          Length = 337

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 161 WFVLREDXSNVILSTNNFVNQ 223
           WF+L  D  N I+S N F N+
Sbjct: 171 WFLLPSDMVNSIISPNKFANE 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,347,113
Number of Sequences: 28952
Number of extensions: 120275
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)