Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30167.Seq
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22270.1 68414.m02783 expressed protein contains Pfam domain ...    64   2e-10
At1g78190.1 68414.m09111 expressed protein                             61   1e-09

>At1g22270.1 68414.m02783 expressed protein contains Pfam domain
           PF03966: Protein of unknown function (DUF343)
          Length = 124

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
 Frame = +2

Query: 257 TGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENK--YD 430
           +G+PL I A ++  KEVDFNP+FI  +  K++W+ L   A S+G+++ LP    +     
Sbjct: 18  SGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAE-LPEESPDAAVLK 76

Query: 431 ENEEFLKKAHKXXXXXXXXXGHLTCPNLXDNFRFLKG 541
            +E FLKK H          G L CP     F   KG
Sbjct: 77  SDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKG 113



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +1

Query: 508 KSGRQFPISKGIPNMXLNEAEV 573
           ++GR+FP++KGIPNM L+E EV
Sbjct: 103 ETGRKFPVNKGIPNMLLHEDEV 124


>At1g78190.1 68414.m09111 expressed protein
          Length = 124

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLEN--KYDEN 436
           +PL I A  + VKEVDFNP+F+  +  K+DW+ L   A S+ +++ LP +  +    + +
Sbjct: 20  FPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTE-LPDNAPDTTTLESD 78

Query: 437 EEFLKKAHKXXXXXXXXXGHLTCPNLXDNFRFLKG 541
           E FL+K H          G L CP     F   KG
Sbjct: 79  ETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKG 113



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 508 KSGRQFPISKGIPNMXLNEAEV 573
           ++GR+F +SKGIPNM L+E EV
Sbjct: 103 ETGRKFSVSKGIPNMLLHEDEV 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,593
Number of Sequences: 28952
Number of extensions: 253512
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)