Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    29   2.4  
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea...    28   4.1  
At2g32750.1 68415.m04007 exostosin family protein contains Pfam ...    27   7.2  
At1g66940.2 68414.m07609 protein kinase-related                        27   7.2  
At1g66940.1 68414.m07608 protein kinase-related                        27   7.2  

>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 160 VVLCTRGSFTFLVFDSQNLALAFYVTAVRACVFISLKFIFV 282
           V+L    +   LVF SQ L LAF + +    +F S  F+FV
Sbjct: 539 VLLDIASTKLLLVFSSQFLGLAFMIGSTCKNIFESFMFVFV 579


>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
           family protein similar to Transcriptional repressor
           rco-1 (SP:P78706) [Neurospora crassa]; similar to
           TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
          Length = 648

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 85  STKLESFSSLEL---YKP*SLSRSATCGVVLCTRGSFTFLVFDSQNLALAFYV 234
           +++L+SF  +E    ++  S+S S T G  LC  GS    +FD   L L  ++
Sbjct: 210 NSRLQSFRQIEPSEGHQVRSVSWSPTSGQFLCVTGSAQAKIFDRDGLTLGEFM 262


>At2g32750.1 68415.m04007 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 509

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 282 WHRSSLAQIPVVWRPPMLRSPCLTLSQSVSIALSLSFSLHFDTS 413
           W+ ++   + V++R  M    CLT + S++ A+ + +   FD S
Sbjct: 145 WYSTNQFLLSVIFRERMKHYECLTNNSSLASAIYVPYYAGFDVS 188


>At1g66940.2 68414.m07609 protein kinase-related
          Length = 309

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 201 KYEKSERASSAEYDATRRTTRER-LGFI*LQR--RKRFELRAVETLSPSKYCIESLGDCQ 31
           KY +S R+S      T   T+E+ L    L+   RK FE+  V   +  + C+ SLG C 
Sbjct: 160 KYPESCRSSFTVKVPTSFDTKEKELNVTNLESVLRKGFEVTVVINENTCQECLSSLGRCH 219

Query: 30  ALTHHCT 10
               + T
Sbjct: 220 VFNENLT 226


>At1g66940.1 68414.m07608 protein kinase-related
          Length = 332

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 201 KYEKSERASSAEYDATRRTTRER-LGFI*LQR--RKRFELRAVETLSPSKYCIESLGDCQ 31
           KY +S R+S      T   T+E+ L    L+   RK FE+  V   +  + C+ SLG C 
Sbjct: 160 KYPESCRSSFTVKVPTSFDTKEKELNVTNLESVLRKGFEVTVVINENTCQECLSSLGRCH 219

Query: 30  ALTHHCT 10
               + T
Sbjct: 220 VFNENLT 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,485
Number of Sequences: 28952
Number of extensions: 159225
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)