Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0253.Seq
(889 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 106 2e-23
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 106 2e-23
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate... 32 0.58
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 30 1.8
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.8
At5g54480.1 68418.m06784 hypothetical protein 30 2.4
At5g55820.1 68418.m06956 expressed protein 29 3.1
At5g19060.1 68418.m02266 expressed protein ; expression supporte... 29 3.1
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 29 4.1
At5g25265.1 68418.m02995 expressed protein 29 5.4
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 7.2
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put... 28 7.2
At4g31880.1 68417.m04531 expressed protein 28 9.5
At4g22710.1 68417.m03276 cytochrome P450 family protein contains... 28 9.5
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 9.5
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 28 9.5
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 9.5
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 106 bits (254), Expect = 2e-23
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +1
Query: 253 QTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRP 432
++ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL RL + +P
Sbjct: 81 RSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
Query: 433 NVGQIREFIEKFPVRLTPGITELVK 507
++ ++ E+++K P RL+PGI ELVK
Sbjct: 141 SLSKVEEYLDKRPPRLSPGIEELVK 165
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/59 (55%), Positives = 39/59 (66%)
Frame = +3
Query: 504 ERLHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQFYFHGEYAGFXXNEPTSR 680
++L + VYL+SGGFR +I PVA L IP NIFAN L F GE+ GF NEPTSR
Sbjct: 165 KKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSR 223
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 106 bits (254), Expect = 2e-23
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +1
Query: 253 QTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRP 432
++ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL RL + +P
Sbjct: 81 RSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
Query: 433 NVGQIREFIEKFPVRLTPGITELVK 507
++ ++ E+++K P RL+PGI ELVK
Sbjct: 141 SLSKVEEYLDKRPPRLSPGIEELVK 165
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/59 (55%), Positives = 39/59 (66%)
Frame = +3
Query: 504 ERLHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQFYFHGEYAGFXXNEPTSR 680
++L + VYL+SGGFR +I PVA L IP NIFAN L F GE+ GF NEPTSR
Sbjct: 165 KKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSR 223
>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
contains weak similarity to Embryogenesis-associated
protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
Length = 537
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +3
Query: 477 TNSWYYRVSERLHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANR---LQFYFHGEY 647
T+++Y R S + V V L+ +L +PV R IP AN+ L HG +
Sbjct: 327 TDTYYRRSSSSQYVENVAVPLLC--ISALDDPVCTREAIPWDECRANKNIVLATTTHGGH 384
Query: 648 AGFXXNEPTSRFWWPRVSGETTEGIARVP 734
+ S WW RV E E + P
Sbjct: 385 LAYYEGLTASSMWWTRVVHEYFEVLLSSP 413
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = -3
Query: 428 LMMSSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 270
L SSLFF + N+++PP SL +SS +L+SSS SS + S TS++
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63
Query: 269 TQSAV*TTPGQSVG 228
T SVG
Sbjct: 64 LSPQKFTVKASSVG 77
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 258
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 100 EFDHNSFVTRRRSNRDGSLQFEKQPAVRDVEDALTGVDQRDVAPTDCPGVV 252
E D+NS + R N+ + + +K+ VR+ + +D+RDV C G V
Sbjct: 213 ESDYNSLI---RKNKKKNKKKKKKKNVRESSSVASEIDKRDVEANTCNGQV 260
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 595 GMFSLSATGSIRLLNPPETRYTMTPLSCNLSLT 497
G + G+ R + PP +R++ LSCN SLT
Sbjct: 1442 GKENQGGAGAKRNVKPPSSRFSKPKLSCNSSLT 1474
>At5g19060.1 68418.m02266 expressed protein ; expression supported
by MPSS
Length = 551
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 288 RVYIEANAVRCLNNSWTVCWGDITLIDTSESVFN 187
+++ +A CL N W WGD +D+ ++ N
Sbjct: 299 KLFSSESAWDCLKNKWIFFWGDSNHVDSIRNLLN 332
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 241 PGVVQTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 384
P T + D +V+QD+ I FCG+G E + A+ N
Sbjct: 12 PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 219 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 88
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 107 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVQEL 250
+I+V+ E + + +SLKS Q ATL T L SI ++ + + L
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTSL 878
>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 883
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 413 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 279
L K + N LPP+ +A+ + T FPQ+ + S+ ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSV 231
PP+ S+V+ TSS +N + +PS E+ + + S P QSV
Sbjct: 399 PPVDSSVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSV 448
>At4g22710.1 68417.m03276 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome p450
Length = 526
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 646 YSPWK*NWSRLAKMLIVGMFSLSATGSIRLLNPPETRYTMTPLS 515
+SP+ +W RL K+ ++ MF+ + + ETR T+ +S
Sbjct: 139 WSPYGTHWRRLRKLCVMKMFTTPSLEASYSTRREETRQTIVHMS 182
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -3
Query: 374 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*STPVRA 195
IA+ + +S+P + +SS P+S M S T SA TTP S S + A
Sbjct: 395 IATTTTTSSSTPAATSAPASSAPASTMAFPSFG-VTSSATNTTPASSAATFSTTGFGL-A 452
Query: 194 SSTSRT 177
SST T
Sbjct: 453 SSTPAT 458
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 515 RKRSHRISSFGRIQESNRTGRGETKHPN-YQ 604
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 515 RKRSHRISSFGRIQESNRTGRGETKHPN-YQ 604
RK + I+SFGR + S GRG+T P+ YQ
Sbjct: 85 RKANCNIASFGRPRPSPPRGRGQTGSPSQYQ 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,178
Number of Sequences: 28952
Number of extensions: 364922
Number of successful extensions: 1112
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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