Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0250.Seq
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    29   1.1  
At1g17380.1 68414.m02120 expressed protein                             28   2.6  
At5g05920.1 68418.m00654 deoxyhypusine synthase almost identical...    28   3.5  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    28   3.5  
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1...    27   8.1  

>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 179  HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGXFAPPA 51
            HCL PP +      SI+LP S+    ++ +    P    FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205


>At1g17380.1 68414.m02120 expressed protein
          Length = 274

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 432 YESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPR-HRTELYPDFGAVMHVLRKKPI 256
           ++ PG   +++++ H    PST+   + K   D SE +   ++L   FG  + V  + P+
Sbjct: 56  FDPPGKQNAMHKAGHSKGEPSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPV 115

Query: 255 DRS 247
           D++
Sbjct: 116 DKA 118


>At5g05920.1 68418.m00654 deoxyhypusine synthase almost identical to
           deoxyhypusine synthase GI:15431345 from [Arabidopsis
           thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 427 ITWRRAESQQIAARRCSTEHNTPPGTEVVY-RLFRAPTSN*VISGLR 290
           + WR A+   +A   CS E   P   E V  ++F   TSN V SG+R
Sbjct: 67  LDWRLADETTVA-EDCSEEEKNPSFRESVKCKIFLGFTSNLVSSGVR 112


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = -2

Query: 435 NYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPI 256
           N++  GAG   +RS+HD    S      + S  + S        + D+      + K   
Sbjct: 558 NHDRSGAGSRSSRSEHDKVTLSKATAMRQNSMKEVSLASEMEVNFNDYSHRNSGVSKDQQ 617

Query: 255 DRSPRSKWASTSRXAF 208
            R+ +S +AS  + +F
Sbjct: 618 QRAKKSGFASIVKKSF 633


>At4g18465.1 68417.m02740 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 704

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 155 ESREALNNVTLLVAFRIQNAXRDVEAHLDRGDRSIGFFLNTCITAPKSGYNSVRCRGSE 331
           E R+ L  +   +   +++   D+EA   R   + GFF N C   P S       RGSE
Sbjct: 589 EIRDQLKRIARRLGITLKSCDGDMEAV--RKAVTAGFFANACRLEPHSNGVYKTIRGSE 645


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,568
Number of Sequences: 28952
Number of extensions: 173834
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)