Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0241.Seq
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil... 38 0.006
At4g36400.2 68417.m05172 FAD linked oxidase family protein low s... 30 1.1
At4g36400.1 68417.m05171 FAD linked oxidase family protein low s... 30 1.1
At1g69360.1 68414.m07960 expressed protein 30 1.1
At4g28025.1 68417.m04020 expressed protein 28 3.4
At5g38190.1 68418.m04602 myosin heavy chain-related 27 7.9
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde... 27 7.9
At1g34190.1 68414.m04241 no apical meristem (NAM) family protein... 27 7.9
At1g32010.1 68414.m03938 myosin heavy chain-related 27 7.9
>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
to SP|Q12627 from Kluyveromyces lactis and SP|P32891
from Saccharomyces cerevisiae; contains Pfam FAD linked
oxidases, C-terminal domain PF02913, Pfam FAD binding
domain PF01565
Length = 567
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 191 LNKIICEETIRLGGSMVHHHGIGKHRVXWSKLEHG-SAWALLEGLKKQFDPNGIMNTG 21
LN + + + G+ HG+G ++ + + E G A ++ +KK DPN IMN G
Sbjct: 501 LNHFMVHSALSMDGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLDPNDIMNPG 558
>At4g36400.2 68417.m05172 FAD linked oxidase family protein low
similarity to SP|Q12627 from Kluyveromyces lactis and
SP|P32891 from Saccharomyces cerevisiae; contains Pfam
FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
binding domain PF01565
Length = 559
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 209 DKYHXPLNKIICEETIRLGGSMVHHHGIG---KHRVXWSKLEHGSAWALLEGLKKQFDPN 39
DK + + E T + GS+ HG+G + + +SK AL+ +KK DP
Sbjct: 486 DKLLGLIEPYVYEWTSKHRGSISAEHGLGVMKANEIFYSKSPE--TVALMASIKKLLDPK 543
Query: 38 GIMN 27
GI+N
Sbjct: 544 GILN 547
>At4g36400.1 68417.m05171 FAD linked oxidase family protein low
similarity to SP|Q12627 from Kluyveromyces lactis and
SP|P32891 from Saccharomyces cerevisiae; contains Pfam
FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
binding domain PF01565
Length = 559
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 209 DKYHXPLNKIICEETIRLGGSMVHHHGIG---KHRVXWSKLEHGSAWALLEGLKKQFDPN 39
DK + + E T + GS+ HG+G + + +SK AL+ +KK DP
Sbjct: 486 DKLLGLIEPYVYEWTSKHRGSISAEHGLGVMKANEIFYSKSPE--TVALMASIKKLLDPK 543
Query: 38 GIMN 27
GI+N
Sbjct: 544 GILN 547
>At1g69360.1 68414.m07960 expressed protein
Length = 896
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 77 PTRCR--VPVCSSXRDVYRYRGGAPSNRRGEW 166
P +C+ VPV SS RD+Y G S+ +G+W
Sbjct: 213 PVQCQDSVPVSSSSRDLYSLYGANISHVQGQW 244
>At4g28025.1 68417.m04020 expressed protein
Length = 157
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 22 PVFIMPLGSNCFFSPSSNAHALPCSSLLQXTR 117
P+F +P G++ FS S+ A+P SSL++ R
Sbjct: 11 PIFFLP-GADAQFSSSNGRFAIPSSSLVKGLR 41
>At5g38190.1 68418.m04602 myosin heavy chain-related
Length = 969
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 209 RFPLPAYSQRRCNRRQVHVGAVLIA 283
RFP+P + R C RQ+ + + +A
Sbjct: 175 RFPIPDFLMRFCRNRQIAISQLTVA 199
>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
susceptibility protein (PMR6) identical to powdery
mildew susceptibility protein [Arabidopsis thaliana]
GI:22506901; similar to pectate lyase 2 GP:6606534 from
[Musa acuminata]
Length = 501
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -2
Query: 266 QHVLVYDYNVVDCKPEEEIDK 204
QH+++++ ++ DCKP +K
Sbjct: 192 QHIIIHNLHIYDCKPSAGFEK 212
>At1g34190.1 68414.m04241 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein;
similar to NAM protein GI:6066595 [Petunia hybrida];
nam-like protein 9 (GI:21105746) [Petunia x hybrida];
NAC1 GI:7716952 [Medicago truncatula]
Length = 557
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 128 YRGGAPSNRRGEWFLHR*SC*A-XCGTCRFPLPAYS 232
YRG APS R +W +H + G C+ P Y+
Sbjct: 124 YRGRAPSGERTDWVMHEYTMDEDELGRCKNPQEYYA 159
>At1g32010.1 68414.m03938 myosin heavy chain-related
Length = 835
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 209 RFPLPAYSQRRCNRRQVHVGAVLIA 283
RFP+P + R C RQ+ + + +A
Sbjct: 175 RFPIPDFLMRFCRNRQIAISQLTVA 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,423
Number of Sequences: 28952
Number of extensions: 185981
Number of successful extensions: 492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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