Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0237.Seq
(907 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12710.1 68416.m01588 methyladenine glycosylase family protei... 66 2e-11
At5g44680.1 68418.m05474 methyladenine glycosylase family protei... 64 2e-10
At1g15970.1 68414.m01916 methyladenine glycosylase family protei... 62 6e-10
At5g57970.1 68418.m07253 methyladenine glycosylase family protei... 58 1e-08
At1g80850.1 68414.m09485 methyladenine glycosylase family protei... 56 4e-08
At1g75090.1 68414.m08721 methyladenine glycosylase family protei... 55 6e-08
At1g13635.1 68414.m01602 methyladenine glycosylase family protei... 52 5e-07
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P... 33 0.26
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z... 32 0.45
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 29 3.2
At4g30860.1 68417.m04381 SET domain-containing protein low simil... 29 5.6
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P... 29 5.6
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 28 9.8
At5g58320.1 68418.m07300 kinase interacting protein-related low ... 28 9.8
At5g38700.1 68418.m04679 expressed protein 28 9.8
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas... 28 9.8
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 28 9.8
>At3g12710.1 68416.m01588 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 312
Score = 66.5 bits (155), Expect = 2e-11
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCC 165
+IP TS S+++SK + +RGF+FVG T+ +SFMQA GL NDH++ CC
Sbjct: 254 KIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITCC 300
>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 353
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +1
Query: 4 TQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
T+ T+ +IP TS S+ +SK + +RGF+FVG T+ +S MQA GL NDH++ C
Sbjct: 289 TKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAAGLTNDHLITC 341
>At1g15970.1 68414.m01916 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 352
Score = 61.7 bits (143), Expect = 6e-10
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCY 171
++P TS ++ +SK L +RGF+ V T+ YSFMQA GL NDH++GC Y
Sbjct: 279 QVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLIGCFRY 327
>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 347
Score = 57.6 bits (133), Expect = 1e-08
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
++P T ++ +SK L +RGF+ VG T+ YSFMQA G+ NDH+ C
Sbjct: 288 QVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSC 333
>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 327
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCY 171
++P TS ++ +SK L +RGF+ V T+ YSFMQ GL NDH+ CC+
Sbjct: 268 QVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLT--CCF 314
>At1g75090.1 68414.m08721 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 329
Score = 55.2 bits (127), Expect = 6e-08
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 25 EIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCY 171
++P + ++ +SK + +RGF+ VG T+ YSF+QA G+VNDH+ C Y
Sbjct: 253 QVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHLTACFRY 301
>At1g13635.1 68414.m01602 methyladenine glycosylase family protein
Contains Pfam profile PF03352: Methyladenine
glycosylase
Length = 311
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1
Query: 28 IPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 162
+P + ++ +SK + KRGF+FVG I +SFMQA GL DH+V C
Sbjct: 250 VPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDC 294
>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 928
Score = 33.1 bits (72), Expect = 0.26
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -1
Query: 505 FFDKPPASGGDGAAAHTASAPYQYRPDGLRCDKHRCQKS----AFHNADKTEKLTVFFPD 338
FF+ PP SGG A P G + + R S FH DK KL V P
Sbjct: 605 FFNPPPPSGGKLLAGKDGGGPDGDVNQGRKSKRPRTLSSKLDGRFH-FDKKTKLLVGHPS 663
Query: 337 PVLRVGKIGIPHQRNAVTPVIRFYKGMPQVVLSSHSSRIAGSS 209
P L VG++ A P +R+ + + ++ S S + +S
Sbjct: 664 PFLSVGEL-------ASDPEVRYQRSLSKIKGKSSISIVGEAS 699
>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 242
Score = 32.3 bits (70), Expect = 0.45
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -1
Query: 430 PDGLRCDKHRCQKSAFHNADKTEKLTVFFPDPVLRVGKIGIPHQRNAVTPVIRFY--KGM 257
P LRC C ++ FH D +E L P+ P R+ +PV Y
Sbjct: 64 PSSLRCAACGCHRN-FHRRDPSENLNFLTAPPISSPSGTESPPSRHVSSPVPCSYYTSAP 122
Query: 256 PQVVLSSHSSRIAGSSER 203
P V+ S SS G S++
Sbjct: 123 PHHVILSLSSGFPGPSDQ 140
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Frame = -1
Query: 406 HRCQKSAFHNADKTEKLTVFFPDPVLRVGKIGIPHQRNAVTPVIRFYKGMPQVVLSSHSS 227
H + FH D V+ D V+ V K G H N P+ F G L
Sbjct: 55 HWASSNRFHIGDSLS--FVYDKDSVMEVDKWGFYHC-NGSDPITAFDNGNSTFDLDRPGL 111
Query: 226 R--IAGSSERCASRIMVYFPDSNSSQPHDHSPAHMP 125
I+GS++ C S + + Q HDH A MP
Sbjct: 112 FYFISGSNQHCTSGQRLIVEVMHIHQHHDHD-ASMP 146
>At4g30860.1 68417.m04381 SET domain-containing protein low
similarity to IL-5 promoter REII-region-binding protein
[Homo sapiens] GI:12642795; contains Pfam profile
PF00856: SET domain
Length = 497
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 157 GCCCYP--GNKP*FGKRNVQNSPRSSNCGWKVQPGASLYKSELL 282
GC C GN+P F K ++ +CGW V+ S+ K + +
Sbjct: 310 GCSCPESCGNRP-FRKEKKIKIVKTEHCGWGVEAAESINKEDFI 352
>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 762
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 508 DFFDKPPASGGDGAAAHTASAPYQYRPDGLRCDKHRCQKS----AFHNADKTEKLTVFFP 341
DF +PPASGG + G + + R S FH DK KL V P
Sbjct: 480 DFSTRPPASGGKLTSGKDVGGIDVDVNQGRKSKRPRTLSSKLDGQFH-FDKKPKLLVGHP 538
Query: 340 DPVLRVGKI 314
P+L G++
Sbjct: 539 SPLLSAGEV 547
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 270 KRITGVTAFRWCGMPILPTRKTGSGKKTVSFSVLSALWKADFWQRCLSHRRPSGR 434
+R +T G P L + GSG +S S LSALW ++ R R PSGR
Sbjct: 92 ERYENITGELRKGSP-LELQSQGSGLSDISASDLSALWTSNEVNRL--GRPPSGR 143
>At5g58320.1 68418.m07300 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 490
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 270 KRITGVTAFRWCGMPILPTRKTGSGKKTVSFSVLSALWKADFWQRCLSHRRPSGR 434
+R +T G P L + GSG +S S LSALW ++ R R PSGR
Sbjct: 92 ERYENITGELRKGSP-LELQSQGSGLSDISASDLSALWTSNEVNRL--GRPPSGR 143
>At5g38700.1 68418.m04679 expressed protein
Length = 161
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 692 WGMAVRVIRRWHGWKNTTVRN*HLQRLNH 606
WG + +RWH ++ + + HL+ LNH
Sbjct: 5 WGRKGGIFKRWHMFELRNLFSKHLKALNH 33
>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
(GSA 2) / glutamate-1-semialdehyde aminotransferase 2
(GSA-AT 2) identical to GSA2 [SP|Q42522]
Length = 472
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = -1
Query: 484 SGGDGAAAHTASAPYQYRPDGLRCDKHRCQKSAFHNADKTEKLTVFFPDPVLRVGKIGIP 305
+G A + SA + R RC K + +KT+K T+ + K +P
Sbjct: 6 TGSGIALGFSCSAKFSKRASS--SSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAAKNLMP 63
Query: 304 HQRNAVTPVIRFYKGMPQVVLSSHSSRI 221
N+ + G P V+ S+ SRI
Sbjct: 64 GGVNSPVRAFKSVGGQPVVMDSAKGSRI 91
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 329 QNWVWEEDGKLLGFVSIMEGRFLAAM 406
+NW W G LLGF I G F A+
Sbjct: 764 KNWYWIGVGGLLGFTVIFNGFFTLAL 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,205,994
Number of Sequences: 28952
Number of extensions: 523917
Number of successful extensions: 1318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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