Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0231.Seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70520.1 68414.m08116 protein kinase family protein contains ...    31   0.71 
At3g28730.1 68416.m03587 structure-specific recognition protein ...    29   2.9  
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ...    28   6.6  
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ...    28   6.6  
At5g38780.1 68418.m04689 S-adenosyl-L-methionine:carboxyl methyl...    27   8.8  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    27   8.8  
At2g24762.1 68415.m02958 expressed protein                             27   8.8  
At1g31820.1 68414.m03908 amino acid permease family protein weak...    27   8.8  

>At1g70520.1 68414.m08116 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 649

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
 Frame = +2

Query: 32  RILFDHLILHSRNYRVHLHGRGGSNQ--CVVPERPGSVLME--QQGSGNIISEDSGQFGY 199
           RI  D   + + NY  +   +G  +   C    R      +  +QG  N ++E SG  GY
Sbjct: 119 RIFLDGCFMRAENYSFYNEYKGPEDSIVCGNTTRKNKTFGDAVRQGLRNAVTEASGTGGY 178

Query: 200 -------GRKESNHSFYRA---RVLL-QFCSKLLRSIKPSFVSAILIISELNSLHGASWV 346
                  G  ES  +F  A   R L    C + L +   S V   L  SE  +LH   ++
Sbjct: 179 ARASAKAGESESESAFVLANCWRTLSPDSCKQCLENASASVVKGCLPWSEGRALHTGCFL 238

Query: 347 SVSRED-TNKATFCGR 391
             S +D  NK    GR
Sbjct: 239 RYSDQDFLNKIPRNGR 254


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 59  HSRNYRVHLHGRGGSNQCVVPERPGSVLMEQQGSGNIISED 181
           HS N  + L GRGG N  ++    G +  ++QG G  +  D
Sbjct: 5   HSFN-NISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVD 44


>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 419 ASLPMFLRXCGRRRWLCSC 363
           A L    + CG+ +WLCSC
Sbjct: 347 ADLKTHEKHCGKNKWLCSC 365


>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 419 ASLPMFLRXCGRRRWLCSC 363
           A L    + CG+ +WLCSC
Sbjct: 347 ADLKTHEKHCGKNKWLCSC 365


>At5g38780.1 68418.m04689 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292], caffeine synthase [Camellia
           sinensis][GI:9967143], SAM:benzoic acid carboxyl
           methyltransferase [Antirrhinum majus][GI:9789277]
          Length = 361

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 189 NLDTAGKNP-IIRFTVPEFSCSFVPN 263
           NLD    NP +  FT+ +F CS  PN
Sbjct: 44  NLDLLNMNPNLSTFTIADFGCSIGPN 69


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 199 RQERIQSFVLPCQSSLAVLFQIVEIDKTFFC 291
           R+ R+ +  +PC + L+ LF+  ++D  F C
Sbjct: 822 RRIRVLNLSIPCTNMLSNLFRSADLDSQFAC 852


>At2g24762.1 68415.m02958 expressed protein
          Length = 156

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 509 SGQSDIYRSESKSIIRSAVGASPEDVLVL--GASLPMFLRXCGRRRWLC 369
           SG+      ES+S +++A  A  E VLV+  G  LP FL      + +C
Sbjct: 72  SGERVDEEKESRSGVKAASAACEEKVLVIMAGDDLPRFLATPAANKCMC 120


>At1g31820.1 68414.m03908 amino acid permease family protein weak
           similarity to asc-type amino acid transporter 2 [Mus
           musculus] GI:18148438; contains Pfam profile PF00324:
           Amino acid permease
          Length = 482

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 131 GSVLMEQQGSGNIISEDSGQFGYGRKESNHSFYRARVL 244
           G   M +   GN+  +D G  G   KE N+S  +  +L
Sbjct: 2   GDYNMNEFAYGNLYDDDDGDVGGSSKEGNNSIQKVSML 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,173
Number of Sequences: 28952
Number of extensions: 283117
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)